This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5hcm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:31, 9 August 2023) (edit) (undo)
 
Line 1: Line 1:
==The GLIC pentameric Ligand-Gated Ion Channel 2-21' cross-linked mutant complexed to bromoform==
==The GLIC pentameric Ligand-Gated Ion Channel 2-21' cross-linked mutant complexed to bromoform==
-
<StructureSection load='5hcm' size='340' side='right' caption='[[5hcm]], [[Resolution|resolution]] 3.15&Aring;' scene=''>
+
<StructureSection load='5hcm' size='340' side='right'caption='[[5hcm]], [[Resolution|resolution]] 3.15&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5hcm]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Glovo Glovo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HCM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HCM FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5hcm]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Gloeobacter_violaceus Gloeobacter violaceus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HCM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HCM FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=MBR:TRIBROMOMETHANE'>MBR</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.15&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">glvI, glr4197 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=33072 GLOVO])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=MBR:TRIBROMOMETHANE'>MBR</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hcm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hcm OCA], [http://pdbe.org/5hcm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hcm RCSB], [http://www.ebi.ac.uk/pdbsum/5hcm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hcm ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hcm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hcm OCA], [https://pdbe.org/5hcm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hcm RCSB], [https://www.ebi.ac.uk/pdbsum/5hcm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hcm ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/GLIC_GLOVI GLIC_GLOVI]] Cationic channel with similar permeabilities for Na(+) and K(+), that is activated by an increase of the proton concentration on the extracellular side. Displays no permeability for chloride ions. Shows slow kinetics of activation, no desensitization and a single channel conductance of 8 pS. Might contribute to adaptation to external pH change.<ref>PMID:17167423</ref>
+
[https://www.uniprot.org/uniprot/GLIC_GLOVI GLIC_GLOVI] Cationic channel with similar permeabilities for Na(+) and K(+), that is activated by an increase of the proton concentration on the extracellular side. Displays no permeability for chloride ions. Shows slow kinetics of activation, no desensitization and a single channel conductance of 8 pS. Might contribute to adaptation to external pH change.<ref>PMID:17167423</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 5hcm" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5hcm" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Ion channels 3D structures|Ion channels 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Glovo]]
+
[[Category: Gloeobacter violaceus]]
-
[[Category: Delarue, M]]
+
[[Category: Large Structures]]
-
[[Category: Sauguet, L]]
+
[[Category: Delarue M]]
-
[[Category: Shahsavar, A]]
+
[[Category: Sauguet L]]
-
[[Category: Anaesthetic]]
+
[[Category: Shahsavar A]]
-
[[Category: Ion channel]]
+
-
[[Category: Receptor]]
+
-
[[Category: Transport protein]]
+

Current revision

The GLIC pentameric Ligand-Gated Ion Channel 2-21' cross-linked mutant complexed to bromoform

PDB ID 5hcm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools