This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4yyi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:09, 27 September 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of BRD9 Bromodomain bound to an acetylated peptide==
==Crystal structure of BRD9 Bromodomain bound to an acetylated peptide==
-
<StructureSection load='4yyi' size='340' side='right' caption='[[4yyi]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
+
<StructureSection load='4yyi' size='340' side='right'caption='[[4yyi]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4yyi]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YYI FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4yyi]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YYI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YYI FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ALY:N(6)-ACETYLLYSINE'>ALY</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4yy4|4yy4]], [[4yy6|4yy6]], [[4yyd|4yyd]], [[4yyg|4yyg]], [[4yyh|4yyh]], [[4yyj|4yyj]], [[4yyk|4yyk]], [[4yym|4yym]], [[4yyn|4yyn]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ALY:N(6)-ACETYLLYSINE'>ALY</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BRD9, UNQ3040/PRO9856 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yyi OCA], [https://pdbe.org/4yyi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yyi RCSB], [https://www.ebi.ac.uk/pdbsum/4yyi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yyi ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yyi OCA], [http://pdbe.org/4yyi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yyi RCSB], [http://www.ebi.ac.uk/pdbsum/4yyi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yyi ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/BRD9_HUMAN BRD9_HUMAN]] May play a role in chromatin remodeling and regulation of transcription.
+
[https://www.uniprot.org/uniprot/BRD9_HUMAN BRD9_HUMAN] May play a role in chromatin remodeling and regulation of transcription.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 20: Line 19:
</div>
</div>
<div class="pdbe-citations 4yyi" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 4yyi" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Bromodomain-containing protein 3D structures|Bromodomain-containing protein 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
-
[[Category: Bellon, S]]
+
[[Category: Large Structures]]
-
[[Category: Cochran, A G]]
+
[[Category: Bellon S]]
-
[[Category: Poy, F]]
+
[[Category: Cochran AG]]
-
[[Category: Tang, Y]]
+
[[Category: Poy F]]
-
[[Category: Bromodomain-acetyllysine complex]]
+
[[Category: Tang Y]]
-
[[Category: Protein binding]]
+

Current revision

Crystal structure of BRD9 Bromodomain bound to an acetylated peptide

PDB ID 4yyi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4yyi"
Personal tools