This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4ynu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:37, 8 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of Aspergillus flavus FADGDH in complex with D-glucono-1,5-lactone==
==Crystal structure of Aspergillus flavus FADGDH in complex with D-glucono-1,5-lactone==
-
<StructureSection load='4ynu' size='340' side='right' caption='[[4ynu]], [[Resolution|resolution]] 1.57&Aring;' scene=''>
+
<StructureSection load='4ynu' size='340' side='right'caption='[[4ynu]], [[Resolution|resolution]] 1.57&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4ynu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aspfn Aspfn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YNU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YNU FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4ynu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_flavus_NRRL3357 Aspergillus flavus NRRL3357]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YNU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YNU FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=LGC:(3S,4R,5R,6S)-3,4,5-TRIHYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2-ONE'>LGC</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.57&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ynt|4ynt]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=LGC:(3S,4R,5R,6S)-3,4,5-TRIHYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2-ONE'>LGC</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AFLA_076820 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=332952 ASPFN])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ynu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ynu OCA], [https://pdbe.org/4ynu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ynu RCSB], [https://www.ebi.ac.uk/pdbsum/4ynu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ynu ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucose_1-dehydrogenase_(FAD,_quinone) Glucose 1-dehydrogenase (FAD, quinone)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.5.9 1.1.5.9] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ynu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ynu OCA], [http://pdbe.org/4ynu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ynu RCSB], [http://www.ebi.ac.uk/pdbsum/4ynu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ynu ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/B8MX95_ASPFN B8MX95_ASPFN]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Aspfn]]
+
[[Category: Aspergillus flavus NRRL3357]]
-
[[Category: Kamitori, S]]
+
[[Category: Large Structures]]
-
[[Category: Kojima, K]]
+
[[Category: Kamitori S]]
-
[[Category: Sakai, G]]
+
[[Category: Kojima K]]
-
[[Category: Sode, K]]
+
[[Category: Sakai G]]
-
[[Category: Yoshida, H]]
+
[[Category: Sode K]]
-
[[Category: Fad]]
+
[[Category: Yoshida H]]
-
[[Category: Glucose dehydrogenase]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal structure of Aspergillus flavus FADGDH in complex with D-glucono-1,5-lactone

PDB ID 4ynu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools