2bdt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:21, 22 May 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2bdt.jpg|left|200px]]
 
-
{{Structure
+
==Crystal Structure of the Putative Gluconate Kinase from Bacillus halodurans, Northeast Structural Genomics Target BhR61==
-
|PDB= 2bdt |SIZE=350|CAPTION= <scene name='initialview01'>2bdt</scene>, resolution 2.40&Aring;
+
<StructureSection load='2bdt' size='340' side='right'caption='[[2bdt]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+
<table><tr><td colspan='2'>[[2bdt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Alkalihalobacillus_halodurans_C-125 Alkalihalobacillus halodurans C-125]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BDT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BDT FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
|GENE= BH3686 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=86665 Bacillus halodurans])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02021 GntK], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=smart00382 AAA]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bdt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bdt OCA], [https://pdbe.org/2bdt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bdt RCSB], [https://www.ebi.ac.uk/pdbsum/2bdt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bdt ProSAT], [https://www.topsan.org/Proteins/NESGC/2bdt TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bdt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bdt OCA], [http://www.ebi.ac.uk/pdbsum/2bdt PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2bdt RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q9K6P2_HALH5 Q9K6P2_HALH5]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal Structure of the Putative Gluconate Kinase from Bacillus halodurans, Northeast Structural Genomics Target BhR61'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/2bdt_consurf.spt"</scriptWhenChecked>
-
2BDT is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_halodurans Bacillus halodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BDT OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Bacillus halodurans]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Abashidze, M.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bdt ConSurf].
-
[[Category: Acton, T B.]]
+
<div style="clear:both"></div>
-
[[Category: Cooper, B.]]
+
__TOC__
-
[[Category: Forouhar, F.]]
+
</StructureSection>
-
[[Category: Hunt, J F.]]
+
[[Category: Alkalihalobacillus halodurans C-125]]
-
[[Category: Janjua, H.]]
+
[[Category: Large Structures]]
-
[[Category: Jayaraman, S.]]
+
[[Category: Abashidze M]]
-
[[Category: Montelione, G T.]]
+
[[Category: Acton TB]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Cooper B]]
-
[[Category: Tong, L.]]
+
[[Category: Forouhar F]]
-
[[Category: Xiao, R.]]
+
[[Category: Hunt JF]]
-
[[Category: alpha-beta protein]]
+
[[Category: Janjua H]]
-
[[Category: nesg]]
+
[[Category: Jayaraman S]]
-
[[Category: northeast structural genomics consortium]]
+
[[Category: Montelione GT]]
-
[[Category: protein structure initiative]]
+
[[Category: Tong L]]
-
[[Category: psi]]
+
[[Category: Xiao R]]
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:04:54 2008''
+

Current revision

Crystal Structure of the Putative Gluconate Kinase from Bacillus halodurans, Northeast Structural Genomics Target BhR61

PDB ID 2bdt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools