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| | ==Structure of Zn(II)-bound metallo-beta-lactamse VIM-2 from Pseudomonas aeruginosa== | | ==Structure of Zn(II)-bound metallo-beta-lactamse VIM-2 from Pseudomonas aeruginosa== |
| - | <StructureSection load='4nq2' size='340' side='right' caption='[[4nq2]], [[Resolution|resolution]] 1.55Å' scene=''> | + | <StructureSection load='4nq2' size='340' side='right'caption='[[4nq2]], [[Resolution|resolution]] 1.55Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4nq2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NQ2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NQ2 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4nq2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NQ2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4NQ2 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1ko3|1ko3]], [[1ko2|1ko2]], [[2yz3|2yz3]]</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">bla vim-2, bla-VIM-2, blasVIM-2, blaVIM-2, blaVIM2, VIM-2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4nq2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nq2 OCA], [https://pdbe.org/4nq2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4nq2 RCSB], [https://www.ebi.ac.uk/pdbsum/4nq2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4nq2 ProSAT]</span></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-lactamase Beta-lactamase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.6 3.5.2.6] </span></td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4nq2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nq2 OCA], [http://pdbe.org/4nq2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4nq2 RCSB], [http://www.ebi.ac.uk/pdbsum/4nq2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4nq2 ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q9K2N0_PSEAI Q9K2N0_PSEAI] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </div> | | </div> |
| | <div class="pdbe-citations 4nq2" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 4nq2" style="background-color:#fffaf0;"></div> |
| | + | |
| | + | ==See Also== |
| | + | *[[Beta-lactamase 3D structures|Beta-lactamase 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Beta-lactamase]] | + | [[Category: Large Structures]] |
| - | [[Category: Aitha, M]] | + | [[Category: Pseudomonas aeruginosa]] |
| - | [[Category: Crowder, M W]] | + | [[Category: Aitha M]] |
| - | [[Category: Nix, J C]] | + | [[Category: Crowder MW]] |
| - | [[Category: Page, R C]] | + | [[Category: Nix JC]] |
| - | [[Category: Hydrolase]] | + | [[Category: Page RC]] |
| - | [[Category: Metallo-beta-lactamase]]
| + | |
| - | [[Category: Zinc binding]]
| + | |
| Structural highlights
Function
Q9K2N0_PSEAI
Publication Abstract from PubMed
This study examines metal binding to metallo-beta-lactamase VIM-2, demonstrating the first successful preparation of a Co(II)-substituted VIM-2 analog. Spectroscopic studies of the half- and fully-metal loaded enzymes show that both Zn(II) and Co(II) bind cooperatively, where the major species present, regardless of stoichiometry, are apo- and di-Zn (or di-Co) enzymes. We determined the di-Zn VIM-2 structure to a resolution of 1.55 A, and this structure supports results from spectroscopic studies. Kinetics, both steady-state and pre-steady-state, show that VIM-2 utilizes a mechanism that proceeds through a very short-lived anionic intermediate when chromacef is used as the substrate. Comparison with other B1 enzymes shows that those that bind Zn(II) cooperatively are better poised to protonate the intermediate on its formation, compared to those that bind Zn(II) non-cooperatively, which uniformly build up substantial amounts of the intermediate.
Biochemical, mechanistic, and spectroscopic characterization of metallo-beta-lactamase VIM-2.,Aitha M, Marts AR, Bergstrom A, Moller AJ, Moritz L, Turner L, Nix JC, Bonomo RA, Page RC, Tierney DL, Crowder MW Biochemistry. 2014 Oct 30. PMID:25356958[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Aitha M, Marts AR, Bergstrom A, Moller AJ, Moritz L, Turner L, Nix JC, Bonomo RA, Page RC, Tierney DL, Crowder MW. Biochemical, mechanistic, and spectroscopic characterization of metallo-beta-lactamase VIM-2. Biochemistry. 2014 Oct 30. PMID:25356958 doi:http://dx.doi.org/10.1021/bi500916y
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