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| ==Crystal structure of the disulfide oxidoreductase DsbA from Proteus mirabilis== | | ==Crystal structure of the disulfide oxidoreductase DsbA from Proteus mirabilis== |
- | <StructureSection load='4oce' size='340' side='right' caption='[[4oce]], [[Resolution|resolution]] 1.77Å' scene=''> | + | <StructureSection load='4oce' size='340' side='right'caption='[[4oce]], [[Resolution|resolution]] 1.77Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4oce]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Promh Promh]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OCE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4OCE FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4oce]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Proteus_mirabilis_HI4320 Proteus mirabilis HI4320]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OCE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4OCE FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.768Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ocf|4ocf]], [[4od7|4od7]]</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dsbA, PMI2828 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=529507 PROMH])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4oce FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4oce OCA], [https://pdbe.org/4oce PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4oce RCSB], [https://www.ebi.ac.uk/pdbsum/4oce PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4oce ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4oce FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4oce OCA], [http://pdbe.org/4oce PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4oce RCSB], [http://www.ebi.ac.uk/pdbsum/4oce PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4oce ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/B4EZ68_PROMH B4EZ68_PROMH] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </div> | | </div> |
| <div class="pdbe-citations 4oce" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 4oce" style="background-color:#fffaf0;"></div> |
| + | |
| + | ==See Also== |
| + | *[[Protein disulfide oxidoreductase 3D structures|Protein disulfide oxidoreductase 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Promh]] | + | [[Category: Large Structures]] |
- | [[Category: Kurth, F]] | + | [[Category: Proteus mirabilis HI4320]] |
- | [[Category: Martin, J L]] | + | [[Category: Kurth F]] |
- | [[Category: Disulfide oxidoreductase]] | + | [[Category: Martin JL]] |
- | [[Category: Dithiol exchange]]
| + | |
- | [[Category: Dsba]]
| + | |
- | [[Category: Dsbb]]
| + | |
- | [[Category: Oxidative folding protein]]
| + | |
- | [[Category: Oxidoreductase]]
| + | |
- | [[Category: Periplasmic]]
| + | |
- | [[Category: Thioredoxin fold]]
| + | |
- | [[Category: Virulence factor maturation protein]]
| + | |
| Structural highlights
Function
B4EZ68_PROMH
Publication Abstract from PubMed
The disulfide bond forming DsbA enzymes and their DsbB interaction partners are attractive targets for development of antivirulence drugs because both are essential for virulence factor assembly in Gram-negative pathogens. Here we characterize PmDsbA from Proteus mirabilis, a bacterial pathogen increasingly associated with multidrug resistance. PmDsbA exhibits the characteristic properties of a DsbA, including an oxidizing potential, destabilizing disulfide, acidic active site cysteine, and dithiol oxidase catalytic activity. We evaluated a peptide PWATCDS derived from the partner protein DsbB and showed by thermal shift and ITC that it binds to PmDsbA. The crystal structures of PmDsbA, and the active site variant PmDsbAC30S were determined to high resolution. Analysis of these structures allows categorization of PmDsbA into the DsbA class exemplified by the archetypal Escherichia coli DsbA enzyme. We also present a crystal structure of PmDsbAC30S in complex with the peptide PWATCDS. The structure shows that the peptide binds non-covalently to the active site CXXC motif, the cis-Pro loop and the hydrophobic groove adjacent to the active site of the enzyme. This high-resolution structural data provides a critical advance for future structure-based design of non-covalent peptidomimetic inhibitors. Such inhibitors would represent an entirely new antibacterial class that work by switching off the DSB virulence assembly machinery.
Crystal Structure of the Dithiol Oxidase DsbA Enzyme from Proteus Mirabilis Bound Non-covalently to an Active Site Peptide Ligand.,Kurth F, Duprez W, Premkumar L, Schembri MA, Fairlie DP, Martin JL J Biol Chem. 2014 May 15. pii: jbc.M114.552380. PMID:24831013[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Kurth F, Duprez W, Premkumar L, Schembri MA, Fairlie DP, Martin JL. Crystal Structure of the Dithiol Oxidase DsbA Enzyme from Proteus Mirabilis Bound Non-covalently to an Active Site Peptide Ligand. J Biol Chem. 2014 May 15. pii: jbc.M114.552380. PMID:24831013 doi:http://dx.doi.org/10.1074/jbc.M114.552380
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