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| | ==Complex structure of Proteus mirablis DsbA (C30S) with a non-covalently bound peptide PWATCDS== | | ==Complex structure of Proteus mirablis DsbA (C30S) with a non-covalently bound peptide PWATCDS== |
| - | <StructureSection load='4od7' size='340' side='right' caption='[[4od7]], [[Resolution|resolution]] 1.60Å' scene=''> | + | <StructureSection load='4od7' size='340' side='right'caption='[[4od7]], [[Resolution|resolution]] 1.60Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4od7]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Promh Promh]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OD7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4OD7 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4od7]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Proteus_mirabilis_HI4320 Proteus mirabilis HI4320]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OD7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4OD7 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.597Å</td></tr> |
| - | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4oce|4oce]], [[4ocf|4ocf]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4od7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4od7 OCA], [https://pdbe.org/4od7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4od7 RCSB], [https://www.ebi.ac.uk/pdbsum/4od7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4od7 ProSAT]</span></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dsbA, PMI2828 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=529507 PROMH])</td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4od7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4od7 OCA], [http://pdbe.org/4od7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4od7 RCSB], [http://www.ebi.ac.uk/pdbsum/4od7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4od7 ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/B4EZ68_PROMH B4EZ68_PROMH] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Promh]] | + | [[Category: Large Structures]] |
| - | [[Category: Kurth, F]] | + | [[Category: Proteus mirabilis HI4320]] |
| - | [[Category: Martin, J L]] | + | [[Category: Kurth F]] |
| - | [[Category: Premkumar, L]] | + | [[Category: Martin JL]] |
| - | [[Category: Disulfide oxidoreductase]] | + | [[Category: Premkumar L]] |
| - | [[Category: Dithiol exchange]]
| + | |
| - | [[Category: Dsba]]
| + | |
| - | [[Category: Dsbb]]
| + | |
| - | [[Category: Oxidative folding protein]]
| + | |
| - | [[Category: Oxidoreductase-peptide complex]]
| + | |
| - | [[Category: Periplasmic]]
| + | |
| - | [[Category: Thioredoxin]]
| + | |
| - | [[Category: Virulence factor maturation protein]]
| + | |
| Structural highlights
Function
B4EZ68_PROMH
Publication Abstract from PubMed
The disulfide bond forming DsbA enzymes and their DsbB interaction partners are attractive targets for development of antivirulence drugs because both are essential for virulence factor assembly in Gram-negative pathogens. Here we characterize PmDsbA from Proteus mirabilis, a bacterial pathogen increasingly associated with multidrug resistance. PmDsbA exhibits the characteristic properties of a DsbA, including an oxidizing potential, destabilizing disulfide, acidic active site cysteine, and dithiol oxidase catalytic activity. We evaluated a peptide PWATCDS derived from the partner protein DsbB and showed by thermal shift and ITC that it binds to PmDsbA. The crystal structures of PmDsbA, and the active site variant PmDsbAC30S were determined to high resolution. Analysis of these structures allows categorization of PmDsbA into the DsbA class exemplified by the archetypal Escherichia coli DsbA enzyme. We also present a crystal structure of PmDsbAC30S in complex with the peptide PWATCDS. The structure shows that the peptide binds non-covalently to the active site CXXC motif, the cis-Pro loop and the hydrophobic groove adjacent to the active site of the enzyme. This high-resolution structural data provides a critical advance for future structure-based design of non-covalent peptidomimetic inhibitors. Such inhibitors would represent an entirely new antibacterial class that work by switching off the DSB virulence assembly machinery.
Crystal Structure of the Dithiol Oxidase DsbA Enzyme from Proteus Mirabilis Bound Non-covalently to an Active Site Peptide Ligand.,Kurth F, Duprez W, Premkumar L, Schembri MA, Fairlie DP, Martin JL J Biol Chem. 2014 May 15. pii: jbc.M114.552380. PMID:24831013[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Kurth F, Duprez W, Premkumar L, Schembri MA, Fairlie DP, Martin JL. Crystal Structure of the Dithiol Oxidase DsbA Enzyme from Proteus Mirabilis Bound Non-covalently to an Active Site Peptide Ligand. J Biol Chem. 2014 May 15. pii: jbc.M114.552380. PMID:24831013 doi:http://dx.doi.org/10.1074/jbc.M114.552380
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