This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5d19

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:22, 6 March 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of Mycobacterium tuberculosis Rv0302, form II==
==Crystal structure of Mycobacterium tuberculosis Rv0302, form II==
-
<StructureSection load='5d19' size='340' side='right' caption='[[5d19]], [[Resolution|resolution]] 2.66&Aring;' scene=''>
+
<StructureSection load='5d19' size='340' side='right'caption='[[5d19]], [[Resolution|resolution]] 2.66&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5d19]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_tuberculosis"_(zopf_1883)_klein_1884 "bacillus tuberculosis" (zopf 1883) klein 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D19 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5D19 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5d19]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D19 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5D19 FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5d18|5d18]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.655&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">acrR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 "Bacillus tuberculosis" (Zopf 1883) Klein 1884])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5d19 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d19 OCA], [https://pdbe.org/5d19 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5d19 RCSB], [https://www.ebi.ac.uk/pdbsum/5d19 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5d19 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5d19 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d19 OCA], [http://pdbe.org/5d19 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5d19 RCSB], [http://www.ebi.ac.uk/pdbsum/5d19 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5d19 ProSAT]</span></td></tr>
+
</table>
</table>
-
<div style="background-color:#fffaf0;">
+
== Function ==
-
== Publication Abstract from PubMed ==
+
[https://www.uniprot.org/uniprot/O07229_MYCTU O07229_MYCTU]
-
Mycobacterium tuberculosis is a pathogenic bacterial species, which is neither Gram positive nor Gram negative. It has a unique cell wall, making it difficult to kill and conferring resistance to antibiotics that disrupt cell wall biosynthesis. Thus, the mycobacterial cell wall is critical to the virulence of these pathogens. Recent work shows that the mycobacterial membrane protein large (MmpL) family of transporters contributes to cell wall biosynthesis by exporting fatty acids and lipidic elements of the cell wall. The expression of the Mycobacterium tuberculosis MmpL proteins is controlled by a complicated regulatory network system. Here we report crystallographic structures of two forms of the TetR-family transcriptional regulator Rv0302, which participates in regulating the expression of MmpL proteins. The structures reveal a dimeric, two-domain molecule with architecture consistent with the TetR family of regulators. Comparison of the two Rv0302 crystal structures suggests that the conformational changes leading to derepression may be due to a rigid body rotational motion within the dimer interface of the regulator. Using fluorescence polarization and electrophoretic mobility shift assays, we demonstrate the recognition of promoter and intragenic regions of multiple mmpL genes by this protein. In addition, our isothermal titration calorimetry and electrophoretic mobility shift experiments indicate that fatty acids may be the natural ligand of this regulator. Taken together, these experiments provide new perspectives on the regulation of the MmpL family of transporters.
+
-
Crystal structure of the Mycobacterium tuberculosis transcriptional regulator Rv0302.,Chou TH, Delmar JA, Wright CC, Kumar N, Radhakrishnan A, Doh JK, Licon MH, Bolla JR, Lei HT, Rajashankar KR, Su CC, Purdy GE, Yu EW Protein Sci. 2015 Sep 12. doi: 10.1002/pro.2802. PMID:26362239<ref>PMID:26362239</ref>
+
==See Also==
-
 
+
*[[Tetracycline repressor protein 3D structures|Tetracycline repressor protein 3D structures]]
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
*[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]]
-
</div>
+
-
<div class="pdbe-citations 5d19" style="background-color:#fffaf0;"></div>
+
-
== References ==
+
-
<references/>
+
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Chou, T H]]
+
[[Category: Large Structures]]
-
[[Category: Delmar, J]]
+
-
[[Category: Su, C C]]
+
-
[[Category: Yu, E]]
+
[[Category: Mycobacterium tuberculosis]]
[[Category: Mycobacterium tuberculosis]]
-
[[Category: Transcription]]
+
[[Category: Chou T-H]]
-
[[Category: Transcriptional regulator]]
+
[[Category: Delmar J]]
 +
[[Category: Su C-C]]
 +
[[Category: Yu E]]

Current revision

Crystal structure of Mycobacterium tuberculosis Rv0302, form II

PDB ID 5d19

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5d19"
Personal tools