This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5uf1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:26, 4 October 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal Structure of Variable Lymphocyte Receptor (VLR) O13 in complex with H-trisaccharide==
==Crystal Structure of Variable Lymphocyte Receptor (VLR) O13 in complex with H-trisaccharide==
-
<StructureSection load='5uf1' size='340' side='right' caption='[[5uf1]], [[Resolution|resolution]] 2.03&Aring;' scene=''>
+
<StructureSection load='5uf1' size='340' side='right'caption='[[5uf1]], [[Resolution|resolution]] 2.03&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5uf1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Petma Petma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UF1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5UF1 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5uf1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Petromyzon_marinus Petromyzon marinus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UF1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5UF1 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.03&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5eui|5eui]], [[5uf4|5uf4]], [[5ufb|5ufb]], [[5ufc|5ufc]], [[5ufd|5ufd]], [[5uff|5uff]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PRD_900036:H+type+2+antigen,+beta+anomer'>PRD_900036</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5uf1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5uf1 OCA], [http://pdbe.org/5uf1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5uf1 RCSB], [http://www.ebi.ac.uk/pdbsum/5uf1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5uf1 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5uf1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5uf1 OCA], [https://pdbe.org/5uf1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5uf1 RCSB], [https://www.ebi.ac.uk/pdbsum/5uf1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5uf1 ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 17: Line 17:
</div>
</div>
<div class="pdbe-citations 5uf1" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5uf1" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Variable lymphocyte receptor 3D structures|Variable lymphocyte receptor 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Petma]]
+
[[Category: Large Structures]]
-
[[Category: Bernard, C C]]
+
[[Category: Petromyzon marinus]]
-
[[Category: Cooper, M D]]
+
[[Category: Collins BC]]
-
[[Category: Cummings, R D]]
+
[[Category: Cooper MD]]
-
[[Category: Gunn, R J]]
+
[[Category: Cummings RD]]
-
[[Category: Herrin, B R]]
+
[[Category: Gunn RJ]]
-
[[Category: McKitrick, T R]]
+
[[Category: Herrin BR]]
-
[[Category: Wilson, I A]]
+
[[Category: McKitrick TR]]
-
[[Category: Adaptive immunity]]
+
[[Category: Wilson IA]]
-
[[Category: Glycan binding]]
+
-
[[Category: Glycan receptor]]
+
-
[[Category: Immune system]]
+
-
[[Category: Jawless fish]]
+
-
[[Category: Leucine-rich repeat]]
+
-
[[Category: Lrr]]
+
-
[[Category: Receptor]]
+
-
[[Category: Sea lamprey]]
+
-
[[Category: Variable lymphocyte receptor]]
+
-
[[Category: Vlr]]
+

Current revision

Crystal Structure of Variable Lymphocyte Receptor (VLR) O13 in complex with H-trisaccharide

PDB ID 5uf1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5uf1"
Personal tools