This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5m7d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:28, 1 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Blood group synthase AAGlyB in complex with UDP-Gal and cryoprotected with glycerol==
==Blood group synthase AAGlyB in complex with UDP-Gal and cryoprotected with glycerol==
-
<StructureSection load='5m7d' size='340' side='right' caption='[[5m7d]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
+
<StructureSection load='5m7d' size='340' side='right'caption='[[5m7d]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5m7d]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M7D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5M7D FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5m7d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M7D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5M7D FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDU:GALACTOSE-URIDINE-5-DIPHOSPHATE'>GDU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3zgf|3zgf]], [[3zgg|3zgg]], [[5m79|5m79]], [[5m7a|5m7a]], [[5m7b|5m7b]], [[5m7c|5m7c]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDU:GALACTOSE-URIDINE-5-DIPHOSPHATE'>GDU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5m7d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m7d OCA], [http://pdbe.org/5m7d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5m7d RCSB], [http://www.ebi.ac.uk/pdbsum/5m7d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5m7d ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5m7d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m7d OCA], [https://pdbe.org/5m7d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5m7d RCSB], [https://www.ebi.ac.uk/pdbsum/5m7d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5m7d ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/BGAT_HUMAN BGAT_HUMAN]] This protein is the basis of the ABO blood group system. The histo-blood group ABO involves three carbohydrate antigens: A, B, and H. A, B, and AB individuals express a glycosyltransferase activity that converts the H antigen to the A antigen (by addition of UDP-GalNAc) or to the B antigen (by addition of UDP-Gal), whereas O individuals lack such activity.
+
[https://www.uniprot.org/uniprot/BGAT_HUMAN BGAT_HUMAN] This protein is the basis of the ABO blood group system. The histo-blood group ABO involves three carbohydrate antigens: A, B, and H. A, B, and AB individuals express a glycosyltransferase activity that converts the H antigen to the A antigen (by addition of UDP-GalNAc) or to the B antigen (by addition of UDP-Gal), whereas O individuals lack such activity.
 +
 
 +
==See Also==
 +
*[[Glycosyltransferase 3D structures|Glycosyltransferase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Rocha, J]]
+
[[Category: Homo sapiens]]
-
[[Category: Royant, A]]
+
[[Category: Large Structures]]
-
[[Category: Blood group synthase]]
+
[[Category: Rocha J]]
-
[[Category: Cis-ab mutant]]
+
[[Category: Royant A]]
-
[[Category: Dual-specificity]]
+
-
[[Category: Glycosyltransferase]]
+
-
[[Category: Transferase]]
+

Current revision

Blood group synthase AAGlyB in complex with UDP-Gal and cryoprotected with glycerol

PDB ID 5m7d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools