This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1bry

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:41, 9 August 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==BRYODIN TYPE I RIP==
==BRYODIN TYPE I RIP==
-
<StructureSection load='1bry' size='340' side='right' caption='[[1bry]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='1bry' size='340' side='right'caption='[[1bry]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1bry]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Brydi Brydi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BRY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BRY FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1bry]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bryonia_dioica Bryonia dioica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BRY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BRY FirstGlance]. <br>
-
</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/rRNA_N-glycosylase rRNA N-glycosylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.22 3.2.2.22] </span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bry FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bry OCA], [http://pdbe.org/1bry PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1bry RCSB], [http://www.ebi.ac.uk/pdbsum/1bry PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1bry ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bry FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bry OCA], [https://pdbe.org/1bry PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bry RCSB], [https://www.ebi.ac.uk/pdbsum/1bry PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bry ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RIP1_BRYDI RIP1_BRYDI]] Ribosome-inactivating protein of type 1, inhibits protein synthesis in animal cells.
+
[https://www.uniprot.org/uniprot/RIP1_BRYDI RIP1_BRYDI] Ribosome-inactivating protein of type 1, inhibits protein synthesis in animal cells.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/br/1bry_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/br/1bry_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 32: Line 32:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Brydi]]
+
[[Category: Bryonia dioica]]
-
[[Category: RRNA N-glycosylase]]
+
[[Category: Large Structures]]
-
[[Category: Chang, C Y]]
+
[[Category: Chang CY]]
-
[[Category: Klei, H E]]
+
[[Category: Klei HE]]
-
[[Category: Bryodin]]
+
-
[[Category: Immunotoxin]]
+
-
[[Category: Ribosome-inactivating protein]]
+

Current revision

BRYODIN TYPE I RIP

PDB ID 1bry

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools