This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5ney

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:52, 15 November 2023) (edit) (undo)
 
Line 1: Line 1:
==Discovery, crystal structures and atomic force microscopy study of thioether ligated D,L-cyclic antimicrobial peptides against multidrug resistant Pseudomonas aeruginosa==
==Discovery, crystal structures and atomic force microscopy study of thioether ligated D,L-cyclic antimicrobial peptides against multidrug resistant Pseudomonas aeruginosa==
-
<StructureSection load='5ney' size='340' side='right' caption='[[5ney]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
+
<StructureSection load='5ney' size='340' side='right'caption='[[5ney]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5ney]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NEY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NEY FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5ney]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NEY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NEY FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=OXE:ORTHO-XYLENE'>OXE</scene>, <scene name='pdbligand=ZDC:3,7-ANHYDRO-2,8-DIDEOXY-L-GLYCERO-D-GLUCO-OCTONIC+ACID'>ZDC</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLY:D-LYSINE'>DLY</scene>, <scene name='pdbligand=DTR:D-TRYPTOPHAN'>DTR</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DLY:D-LYSINE'>DLY</scene>, <scene name='pdbligand=DTR:D-TRYPTOPHAN'>DTR</scene>, <scene name='pdbligand=OXE:ORTHO-XYLENE'>OXE</scene>, <scene name='pdbligand=ZDC:3,7-ANHYDRO-2,8-DIDEOXY-L-GLYCERO-D-GLUCO-OCTONIC+ACID'>ZDC</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lecB, PAERUG_E15_London_28_01_14_00983, PAERUG_P32_London_17_VIM_2_10_11_00423, PAMH19_1713 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ney FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ney OCA], [https://pdbe.org/5ney PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ney RCSB], [https://www.ebi.ac.uk/pdbsum/5ney PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ney ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ney FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ney OCA], [http://pdbe.org/5ney PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ney RCSB], [http://www.ebi.ac.uk/pdbsum/5ney PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ney ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9HYN5_PSEAE Q9HYN5_PSEAE]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bonaventura, I Di]]
+
[[Category: Large Structures]]
-
[[Category: Darbre, T]]
+
-
[[Category: Delden, C van]]
+
-
[[Category: Fu, Y]]
+
-
[[Category: He, R]]
+
-
[[Category: Hong, W]]
+
-
[[Category: Koehler, T]]
+
-
[[Category: Luscher, A]]
+
-
[[Category: Reymond, J L]]
+
-
[[Category: Stocker, A]]
+
-
[[Category: Visini, R]]
+
-
[[Category: Antimicrobial]]
+
-
[[Category: Cyclic peptide]]
+
[[Category: Pseudomonas aeruginosa]]
[[Category: Pseudomonas aeruginosa]]
-
[[Category: Sugar binding protein]]
+
[[Category: Synthetic construct]]
 +
[[Category: Darbre T]]
 +
[[Category: Di Bonaventura I]]
 +
[[Category: Fu Y]]
 +
[[Category: He R]]
 +
[[Category: Hong W]]
 +
[[Category: Koehler T]]
 +
[[Category: Luscher A]]
 +
[[Category: Reymond J-L]]
 +
[[Category: Stocker A]]
 +
[[Category: Visini R]]
 +
[[Category: Van Delden C]]

Current revision

Discovery, crystal structures and atomic force microscopy study of thioether ligated D,L-cyclic antimicrobial peptides against multidrug resistant Pseudomonas aeruginosa

PDB ID 5ney

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5ney"
Personal tools