5x20

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Current revision (07:53, 22 November 2023) (edit) (undo)
 
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==The ternary structure of D-mandelate dehydrogenase with NADH and anilino(oxo)acetate==
==The ternary structure of D-mandelate dehydrogenase with NADH and anilino(oxo)acetate==
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<StructureSection load='5x20' size='340' side='right' caption='[[5x20]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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<StructureSection load='5x20' size='340' side='right'caption='[[5x20]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5x20]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterococcus_faecium_atcc_baa-472 Enterococcus faecium atcc baa-472]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X20 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5X20 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5x20]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_faecium_DO Enterococcus faecium DO]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X20 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5X20 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AOT:2-OXIDANYLIDENE-2-PHENYLAZANYL-ETHANOIC+ACID'>AOT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3wfi|3wfi]], [[3wfj|3wfj]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AOT:2-OXIDANYLIDENE-2-PHENYLAZANYL-ETHANOIC+ACID'>AOT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">panE, HMPREF0351_10295 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=333849 Enterococcus faecium ATCC BAA-472])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5x20 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x20 OCA], [https://pdbe.org/5x20 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5x20 RCSB], [https://www.ebi.ac.uk/pdbsum/5x20 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5x20 ProSAT]</span></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/2-dehydropantoate_2-reductase 2-dehydropantoate 2-reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.169 1.1.1.169] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5x20 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x20 OCA], [http://pdbe.org/5x20 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5x20 RCSB], [http://www.ebi.ac.uk/pdbsum/5x20 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5x20 ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/Q3Y316_ENTFC Q3Y316_ENTFC]] Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.[RuleBase:RU362068]
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[https://www.uniprot.org/uniprot/Q3Y316_ENTFD Q3Y316_ENTFD] Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.[ARBA:ARBA00002919][RuleBase:RU362068]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 5x20" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5x20" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Mandelate dehydrogenase|Mandelate dehydrogenase]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: 2-dehydropantoate 2-reductase]]
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[[Category: Enterococcus faecium DO]]
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[[Category: Enterococcus faecium atcc baa-472]]
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[[Category: Large Structures]]
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[[Category: Furukawa, N]]
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[[Category: Furukawa N]]
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[[Category: Miyanaga, A]]
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[[Category: Miyanaga A]]
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[[Category: Nakajima, M]]
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[[Category: Nakajima M]]
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[[Category: Taguchi, H]]
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[[Category: Taguchi H]]
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[[Category: Dehydrogenase]]
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[[Category: Nadh binding]]
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[[Category: Oxidoreductase]]
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[[Category: Rossmann fold]]
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Current revision

The ternary structure of D-mandelate dehydrogenase with NADH and anilino(oxo)acetate

PDB ID 5x20

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