6f6i

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(New page: '''Unreleased structure''' The entry 6f6i is ON HOLD Authors: Ren, J., Zhao, Y., Fry, E.E., Stuart, D.I. Description: CRYSTAL STRUCTURE OF EBOLAVIRUS GLYCOPROTEIN IN COMPLEX WITH PAROX...)
Current revision (20:59, 24 January 2018) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 6f6i is ON HOLD
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==CRYSTAL STRUCTURE OF EBOLAVIRUS GLYCOPROTEIN IN COMPLEX WITH PAROXETINE==
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<StructureSection load='6f6i' size='340' side='right' caption='[[6f6i]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6f6i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ebov Ebov] and [http://en.wikipedia.org/wiki/Zebov Zebov]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6F6I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6F6I FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8PR:PAROXETINE'>8PR</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6f5u|6f5u]]</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GP, DH33_45402gpGP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=186538 ZEBOV]), GP, DF49_53415gpGP, DF49_53416gpGP, DF49_53417gpGP, DF49_53418gpGP, DF49_53419gpGP, DF49_53420gpGP, DF49_53421gpGP, DF49_53422gpGP, DF49_53423gpGP, DF49_53424gpGP, DF49_53425gpGP, DF49_53426gpGP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1570291 EBOV])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6f6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6f6i OCA], [http://pdbe.org/6f6i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6f6i RCSB], [http://www.ebi.ac.uk/pdbsum/6f6i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6f6i ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Here we show that four chemically divergent approved drugs reported to inhibit Ebolavirus infection, benztropine, bepridil, paroxetine and sertraline, directly interact with the Ebolavirus glycoprotein. Binding of these drugs destabilise the protein, suggesting that this may be the mechanism of inhibition, as reported for the anticancer drug toremifene and the painkiller ibuprofen, which bind in the same large cavity on the glycoprotein. Crystal structures show that the position of binding and the mode of interaction within the pocket vary significantly between these compounds. The binding constants (Kd) determined by thermal shift assay correlate with the protein-inhibitor interactions as well as with the antiviral activities determined by virus cell entry assays, supporting the hypothesis that these drugs inhibit viral entry by binding the glycoprotein and destabilising the pre-fusion conformation. Details of the protein-inhibitor interactions of these complexes and their relation with binding affinity may facilitate the design of more potent inhibitors.
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Authors: Ren, J., Zhao, Y., Fry, E.E., Stuart, D.I.
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Target identification and mode of action of four chemically divergent drugs against Ebola virus infection.,Ren J, Zhao Y, Fry EE, Stuart DI J Med Chem. 2017 Dec 22. doi: 10.1021/acs.jmedchem.7b01249. PMID:29272110<ref>PMID:29272110</ref>
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Description: CRYSTAL STRUCTURE OF EBOLAVIRUS GLYCOPROTEIN IN COMPLEX WITH PAROXETINE
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 6f6i" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Ebov]]
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[[Category: Zebov]]
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[[Category: Fry, E E]]
[[Category: Ren, J]]
[[Category: Ren, J]]
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[[Category: Stuart, D.I]]
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[[Category: Stuart, D I]]
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[[Category: Fry, E.E]]
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[[Category: Zhao, Y]]
[[Category: Zhao, Y]]
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[[Category: Benztropine]]
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[[Category: Bepridil]]
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[[Category: Ebola virus]]
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[[Category: Envelope glycoprotein]]
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[[Category: Filoviridae]]
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[[Category: Ibuprofen]]
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[[Category: Paroxetine]]
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[[Category: Protein inhibitor complex]]
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[[Category: Sertraline]]
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[[Category: Toremifene]]
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[[Category: Viral protein]]

Current revision

CRYSTAL STRUCTURE OF EBOLAVIRUS GLYCOPROTEIN IN COMPLEX WITH PAROXETINE

6f6i, resolution 2.40Å

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