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| ==Crystal structure of raptor adenovirus 1 fibre head, beta-hairpin deleted form== | | ==Crystal structure of raptor adenovirus 1 fibre head, beta-hairpin deleted form== |
- | <StructureSection load='5fld' size='340' side='right' caption='[[5fld]], [[Resolution|resolution]] 1.70Å' scene=''> | + | <StructureSection load='5fld' size='340' side='right'caption='[[5fld]], [[Resolution|resolution]] 1.70Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5fld]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Raptor_adenovirus_a Raptor adenovirus a]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FLD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FLD FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5fld]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Raptor_siadenovirus_A Raptor siadenovirus A]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FLD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FLD FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fld FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fld OCA], [http://pdbe.org/5fld PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fld RCSB], [http://www.ebi.ac.uk/pdbsum/5fld PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5fld ProSAT]</span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fld FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fld OCA], [https://pdbe.org/5fld PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fld RCSB], [https://www.ebi.ac.uk/pdbsum/5fld PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fld ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/F4MI11_9ADEN F4MI11_9ADEN] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </div> | | </div> |
| <div class="pdbe-citations 5fld" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 5fld" style="background-color:#fffaf0;"></div> |
| + | |
| + | ==See Also== |
| + | *[[Raptor 3D structures|Raptor 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Raptor adenovirus a]] | + | [[Category: Large Structures]] |
- | [[Category: Nguyen, T H]] | + | [[Category: Raptor siadenovirus A]] |
- | [[Category: Raaij, M J.van]] | + | [[Category: Nguyen TH]] |
- | [[Category: Cell adhesion]] | + | [[Category: Van Raaij MJ]] |
| Structural highlights
Function
F4MI11_9ADEN
Publication Abstract from PubMed
BACKGROUND: Most adenoviruses recognize their host cells via an interaction of their fibre head domains with a primary receptor. The structural framework of adenovirus fibre heads is conserved between the different adenovirus genera for which crystal structures have been determined (Mastadenovirus, Aviadenovirus, Atadenovirus and Siadenovirus), but genus-specific differences have also been observed. The only known siadenovirus fibre head structure, that of turkey adenovirus 3 (TAdV-3), revealed a twisted beta-sandwich resembling the reovirus fibre head architecture more than that of other adenovirus fibre heads, plus a unique beta-hairpin embracing a neighbouring monomer. The TAdV-3 fibre head was shown to bind sialyllactose. METHODS: Raptor adenovirus 1 (RAdV-1) fibre head was expressed, crystallized and its structure was solved and refined at 1.5 A resolution. The structure could be solved by molecular replacement using the TAdV-3 fibre head structure as a search model, despite them sharing a sequence identity of only 19 %. Versions of both the RAdV-1 and TAdV-3 fibre heads with their beta-hairpin arm deleted were prepared and their stabilities were compared with the non-mutated proteins by a thermal unfolding assay. RESULTS: The structure of the RAdV-1 fibre head contains the same twisted ABCJ-GHID beta-sandwich and beta-hairpin arm as the TAdV-3 fibre head. However, while the predicted electro-potential surface charge of the TAdV-3 fibre head is mainly positive, the RAdV-1 fibre head shows positively and negatively charged patches and does not appear to bind sialyllactose. Deletion of the beta-hairpin arm does not affect the structure of the raptor adenovirus 1 fibre head and only affects the stability of the RAdV-1 and TAdV-3 fibre heads slightly. CONCLUSIONS: The high-resolution structure of RAdV-1 fibre head is the second known structure of a siadenovirus fibre head domain. The structure shows that the siadenovirus fibre head structure is conserved, but differences in the predicted surface charge suggest that RAdV-1 uses a different natural receptor for cell attachment than TAdV-3. Deletion of the beta-hairpin arm shows little impact on the structure and stability of the siadenovirus fibre heads.
Crystal structure of raptor adenovirus 1 fibre head and role of the beta-hairpin in siadenovirus fibre head domains.,Nguyen TH, Ballmann MZ, Do HT, Truong HN, Benko M, Harrach B, van Raaij MJ Virol J. 2016 Jun 22;13:106. doi: 10.1186/s12985-016-0558-7. PMID:27334597[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Nguyen TH, Ballmann MZ, Do HT, Truong HN, Benko M, Harrach B, van Raaij MJ. Crystal structure of raptor adenovirus 1 fibre head and role of the beta-hairpin in siadenovirus fibre head domains. Virol J. 2016 Jun 22;13:106. doi: 10.1186/s12985-016-0558-7. PMID:27334597 doi:http://dx.doi.org/10.1186/s12985-016-0558-7
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