1e5x

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:18, 9 April 2025) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Structure of threonine synthase from Arabidopsis thaliana==
==Structure of threonine synthase from Arabidopsis thaliana==
-
<StructureSection load='1e5x' size='340' side='right' caption='[[1e5x]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
+
<StructureSection load='1e5x' size='340' side='right'caption='[[1e5x]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1e5x]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E5X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1E5X FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1e5x]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1E5X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1E5X FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=MSO:SELENOMETHIONINE+SELENOXIDE'>MSO</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NUCLEAR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=MSO:SELENOMETHIONINE+SELENOXIDE'>MSO</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Threonine_synthase Threonine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.3.1 4.2.3.1] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1e5x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1e5x OCA], [https://pdbe.org/1e5x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1e5x RCSB], [https://www.ebi.ac.uk/pdbsum/1e5x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1e5x ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1e5x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1e5x OCA], [http://pdbe.org/1e5x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1e5x RCSB], [http://www.ebi.ac.uk/pdbsum/1e5x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1e5x ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/THRC1_ARATH THRC1_ARATH]] Catalyzes the gamma-elimination of phosphate from L-phosphohomoserine and the beta-addition of water to produce L-threonine.
+
[https://www.uniprot.org/uniprot/THRC1_ARATH THRC1_ARATH] Catalyzes the gamma-elimination of phosphate from L-phosphohomoserine and the beta-addition of water to produce L-threonine.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 16: Line 15:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e5/1e5x_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e5/1e5x_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 34: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Arath]]
+
[[Category: Arabidopsis thaliana]]
-
[[Category: Threonine synthase]]
+
[[Category: Large Structures]]
-
[[Category: Biou, V]]
+
[[Category: Biou V]]
-
[[Category: Curien, G]]
+
[[Category: Curien G]]
-
[[Category: Dumas, R]]
+
[[Category: Dumas R]]
-
[[Category: Thomazeau, K]]
+
[[Category: Thomazeau K]]
-
[[Category: Allostery]]
+
-
[[Category: Plp enzyme]]
+
-
[[Category: S-adenosyl-methionine]]
+
-
[[Category: Threonine biosynthesis]]
+

Current revision

Structure of threonine synthase from Arabidopsis thaliana

PDB ID 1e5x

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools