Sandbox Reserved 1376

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: {{Sandbox_Reserved_HLSC322}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE --> ==Your Heading Here (maybe something like 'Structure')== <StructureSection load='1stp' size='340' side='right' capti...)
Current revision (21:10, 1 March 2018) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Sandbox_Reserved_HLSC322}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
+
==5xn9, SAHS protein from Ramazzottius varieornatus==
-
==Your Heading Here (maybe something like 'Structure')==
+
<StructureSection load='5xn9' size='340' side='right' caption='crystal structure' scene=''>
-
<StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''>
+
 
-
This is a default text for your page ''''''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
+
-
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
+
== Function ==
== Function ==
-
== Disease ==
+
Tardigrades ''(Ramazzottius varieornatus)'', informally known as water bears, are viewed as the most resilient organisms on the planet. They have the capability to shut down metabolic processes and undergo anydrobiosis, a dehydrated state in which they can exist even in the vacuum of space. One of the secrets to their success may be '''5xn9''', a secreted heat soluble protein. The protein shields organelles and extracellular components during dehydration to improve desiccation tolerance and prevent crystallization.
-
 
+
-
== Relevance ==
+
== Structural highlights ==
== Structural highlights ==
-
This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
+
The 5xn9 protein derives its function primarily from several key sites. The first are the <scene name='77/777696/Beta_barrel/2'>beta barrels</scene>, two large beta-sheets that coil to form a barrel-like structure that allows hydrophobic residues to form unusual networks of hydrogen bonds.
 +
 
 +
Beta barrels are commonly seen in membrane proteins and often contain alternating residues of hydrophobic and hydrophilic amino acids, as can be seen <scene name='77/777696/Hydrophobic/1'>here</scene> with hydrophobic regions in red and hydrophilic regions in turquoise. The particular beta barrel on 5xn9 is very similar to that of '''fatty acid binding proteins (FABPs)'''.
 +
 
 +
Other components of interests on 5xn9 include <scene name='77/777696/Ions/2'>Zn and Mg</scene> protein modification binding sites. Zinc is shown in blue and magnesium in magenta. These and other post-translational modifications play an important role in determining the structure of 5xn9 and improving its tolerance to dehydration.
 +
 
</StructureSection>
</StructureSection>
== References ==
== References ==
<references/>
<references/>
 +
Fukuda, Y., Miura, Y., Mizohata, E. and Inoue, T. (2017), Structural insights into a secretory abundant heat-soluble protein from an anhydrobiotic tardigrade, ''Ramazzottius varieornatus''. FEBS Lett, 591: 2458–2469. doi:10.1002/1873-3468.12752

Current revision

5xn9, SAHS protein from Ramazzottius varieornatus

crystal structure

Drag the structure with the mouse to rotate

References

Fukuda, Y., Miura, Y., Mizohata, E. and Inoue, T. (2017), Structural insights into a secretory abundant heat-soluble protein from an anhydrobiotic tardigrade, Ramazzottius varieornatus. FEBS Lett, 591: 2458–2469. doi:10.1002/1873-3468.12752

Personal tools