This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2cwe

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:20, 25 October 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2cwe.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of hypothetical transcriptional regulator protein, PH1932 from Pyrococcus horikoshii OT3==
-
|PDB= 2cwe |SIZE=350|CAPTION= <scene name='initialview01'>2cwe</scene>, resolution 2.70&Aring;
+
<StructureSection load='2cwe' size='340' side='right'caption='[[2cwe]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2cwe]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CWE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CWE FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cwe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cwe OCA], [https://pdbe.org/2cwe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cwe RCSB], [https://www.ebi.ac.uk/pdbsum/2cwe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cwe ProSAT], [https://www.topsan.org/Proteins/RSGI/2cwe TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00090 HTH_ARSR], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1777 COG1777]</span>
+
</table>
-
|RELATEDENTRY=
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cwe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cwe OCA], [http://www.ebi.ac.uk/pdbsum/2cwe PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2cwe RCSB]</span>
+
[https://www.uniprot.org/uniprot/O59595_PYRHO O59595_PYRHO]
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Crystal structure of hypothetical transcriptional regulator protein, PH1932 from Pyrococcus horikoshii OT3'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cw/2cwe_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
2CWE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CWE OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Pyrococcus horikoshii]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cwe ConSurf].
-
[[Category: Arai, R.]]
+
<div style="clear:both"></div>
-
[[Category: Kishishita, S.]]
+
__TOC__
-
[[Category: Kukimoto-Niino, M.]]
+
</StructureSection>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Large Structures]]
-
[[Category: Shirouzu, M.]]
+
[[Category: Pyrococcus horikoshii OT3]]
-
[[Category: Sugawara, M.]]
+
[[Category: Arai R]]
-
[[Category: Wang, H.]]
+
[[Category: Kishishita S]]
-
[[Category: Yokoyama, S.]]
+
[[Category: Kukimoto-Niino M]]
-
[[Category: hypothecital protein]]
+
[[Category: Shirouzu M]]
-
[[Category: national project on protein structural and functional analyse]]
+
[[Category: Sugawara M]]
-
[[Category: nppsfa]]
+
[[Category: Wang H]]
-
[[Category: protein structure initiative]]
+
[[Category: Yokoyama S]]
-
[[Category: psi]]
+
-
[[Category: riken structural genomics/proteomics initiative]]
+
-
[[Category: rsgi]]
+
-
[[Category: structural genomic]]
+
-
[[Category: transcription regulator]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:27:17 2008''
+

Current revision

Crystal structure of hypothetical transcriptional regulator protein, PH1932 from Pyrococcus horikoshii OT3

PDB ID 2cwe

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2cwe"
Personal tools