We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

2cyj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:21, 25 October 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2cyj.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of conserved hypothetical protein PH1505 from Pyrococcus horikoshii OT3==
-
|PDB= 2cyj |SIZE=350|CAPTION= <scene name='initialview01'>2cyj</scene>, resolution 1.50&Aring;
+
<StructureSection load='2cyj' size='340' side='right'caption='[[2cyj]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CYO:OXYGENS+BOUND+TO+CYS+SG'>CYO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+
<table><tr><td colspan='2'>[[2cyj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CYJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CYJ FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
|GENE= PH1505 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 Pyrococcus horikoshii OT3])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=OCS:CYSTEINESULFONIC+ACID'>OCS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cyj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cyj OCA], [https://pdbe.org/2cyj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cyj RCSB], [https://www.ebi.ac.uk/pdbsum/2cyj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cyj ProSAT], [https://www.topsan.org/Proteins/RSGI/2cyj TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cyj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cyj OCA], [http://www.ebi.ac.uk/pdbsum/2cyj PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2cyj RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/O59174_PYRHO O59174_PYRHO]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of conserved hypothetical protein PH1505 from Pyrococcus horikoshii OT3'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/2cyj_consurf.spt"</scriptWhenChecked>
-
2CYJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii_ot3 Pyrococcus horikoshii ot3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CYJ OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Pyrococcus horikoshii ot3]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Arai, R.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cyj ConSurf].
-
[[Category: Ito, K.]]
+
<div style="clear:both"></div>
-
[[Category: Kamo-Uchikubo, T.]]
+
__TOC__
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
</StructureSection>
-
[[Category: Shirouzu, M.]]
+
[[Category: Large Structures]]
-
[[Category: Yokoyama, S.]]
+
[[Category: Pyrococcus horikoshii OT3]]
-
[[Category: conserved hypothetical protein]]
+
[[Category: Arai R]]
-
[[Category: national project on protein structural and functional analyse]]
+
[[Category: Ito K]]
-
[[Category: nppsfa]]
+
[[Category: Kamo-Uchikubo T]]
-
[[Category: riken structural genomics/proteomics initiative]]
+
[[Category: Shirouzu M]]
-
[[Category: rsgi]]
+
[[Category: Yokoyama S]]
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:28:03 2008''
+

Current revision

Crystal structure of conserved hypothetical protein PH1505 from Pyrococcus horikoshii OT3

PDB ID 2cyj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools