1g01

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:23, 13 March 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==ALKALINE CELLULASE K CATALYTIC DOMAIN==
==ALKALINE CELLULASE K CATALYTIC DOMAIN==
-
<StructureSection load='1g01' size='340' side='right' caption='[[1g01]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='1g01' size='340' side='right'caption='[[1g01]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1g01]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacs6 Bacs6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1G01 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1G01 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1g01]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._KSM-635 Bacillus sp. KSM-635]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1G01 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1G01 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1g0c|1g0c]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1g01 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1g01 OCA], [https://pdbe.org/1g01 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1g01 RCSB], [https://www.ebi.ac.uk/pdbsum/1g01 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1g01 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1g01 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1g01 OCA], [http://pdbe.org/1g01 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1g01 RCSB], [http://www.ebi.ac.uk/pdbsum/1g01 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1g01 ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/GUN_BACS6 GUN_BACS6]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 19: Line 20:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1g01 ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1g01 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
The crystal structure of the catalytic domain of alkaline cellulase K was determined at 1.9 A resolution. Because of the most alkaliphilic nature and it's highest activity at pH 9.5, it is used commercially in laundry detergents. An analysis of the structural bases of the alkaliphilic character of the enzyme suggested a mechanism similar to that previously proposed for alkaline proteases, that is, an increase in the number of Arg, His, and Gln residues, and a decrease in Asp and Lys residues. Some ion pairs were formed by the gained Arg residues, which is similar to what has been found in the alkaline proteases. Lys-Asp ion pairs are disfavored and partly replaced with Arg-Asp ion pairs. The alkaline adaptation appeared to be a remodeling of ion pairs so that the charge balance is kept in the high pH range.
 
-
Crystal structure of alkaline cellulase K: insight into the alkaline adaptation of an industrial enzyme.,Shirai T, Ishida H, Noda J, Yamane T, Ozaki K, Hakamada Y, Ito S J Mol Biol. 2001 Jul 27;310(5):1079-87. PMID:11501997<ref>PMID:11501997</ref>
+
==See Also==
-
 
+
*[[Glucanase 3D structures|Glucanase 3D structures]]
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 1g01" style="background-color:#fffaf0;"></div>
+
-
== References ==
+
-
<references/>
+
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacs6]]
+
[[Category: Bacillus sp. KSM-635]]
-
[[Category: Cellulase]]
+
[[Category: Large Structures]]
-
[[Category: Hakamada, Y]]
+
[[Category: Hakamada Y]]
-
[[Category: Ishida, H]]
+
[[Category: Ishida H]]
-
[[Category: Ito, S]]
+
[[Category: Ito S]]
-
[[Category: Noda, J]]
+
[[Category: Noda J]]
-
[[Category: Ozaki, K]]
+
[[Category: Ozaki K]]
-
[[Category: Shirai, T]]
+
[[Category: Shirai T]]
-
[[Category: Yamane, T]]
+
[[Category: Yamane T]]
-
[[Category: Alpha/beta barrel]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Tim barrel]]
+

Current revision

ALKALINE CELLULASE K CATALYTIC DOMAIN

PDB ID 1g01

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools