This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5mze

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:54, 8 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of mouse MTH1 with 8-oxo-dGTP==
==Crystal structure of mouse MTH1 with 8-oxo-dGTP==
-
<StructureSection load='5mze' size='340' side='right' caption='[[5mze]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='5mze' size='340' side='right'caption='[[5mze]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5mze]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MZE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5MZE FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5mze]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MZE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5MZE FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8DG:8-OXO-2-DEOXYGUANOSINE-5-TRIPHOSPHATE'>8DG</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5mze FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mze OCA], [http://pdbe.org/5mze PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5mze RCSB], [http://www.ebi.ac.uk/pdbsum/5mze PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5mze ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8DG:8-OXO-2-DEOXYGUANOSINE-5-TRIPHOSPHATE'>8DG</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5mze FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mze OCA], [https://pdbe.org/5mze PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5mze RCSB], [https://www.ebi.ac.uk/pdbsum/5mze PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5mze ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/8ODP_MOUSE 8ODP_MOUSE]] Antimutagenic. Acts as a sanitizing enzyme for oxidized nucleotide pools, thus suppressing cell dysfunction and death induced by oxidative stress. Hydrolyzes 8-oxo-dGTP, 8-oxo-dATP and 2-OH-dATP, thus preventing misincorporation of oxidized purine nucleoside triphosphates into DNA and subsequently preventing A:T to C:G and G:C to T:A transversions. Able to hydrolyze also the corresponding ribonucleotides, 2-OH-ATP, 8-oxo-GTP and 8-oxo-ATP. Does not play a role in U8 snoRNA decapping activity. Binds U8 snoRNA.<ref>PMID:7592783</ref>
+
[https://www.uniprot.org/uniprot/8ODP_MOUSE 8ODP_MOUSE] Antimutagenic. Acts as a sanitizing enzyme for oxidized nucleotide pools, thus suppressing cell dysfunction and death induced by oxidative stress. Hydrolyzes 8-oxo-dGTP, 8-oxo-dATP and 2-OH-dATP, thus preventing misincorporation of oxidized purine nucleoside triphosphates into DNA and subsequently preventing A:T to C:G and G:C to T:A transversions. Able to hydrolyze also the corresponding ribonucleotides, 2-OH-ATP, 8-oxo-GTP and 8-oxo-ATP. Does not play a role in U8 snoRNA decapping activity. Binds U8 snoRNA.<ref>PMID:7592783</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 19:
</div>
</div>
<div class="pdbe-citations 5mze" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5mze" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[7%2C8-dihydro-8-oxoguanine triphosphatase 3D structures|7%2C8-dihydro-8-oxoguanine triphosphatase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Helleday, T]]
+
[[Category: Large Structures]]
-
[[Category: Jemth, A S]]
+
[[Category: Mus musculus]]
-
[[Category: Narwal, M]]
+
[[Category: Helleday T]]
-
[[Category: Stenmark, P]]
+
[[Category: Jemth A-S]]
-
[[Category: Complex]]
+
[[Category: Narwal M]]
-
[[Category: Hydrolase]]
+
[[Category: Stenmark P]]
-
[[Category: Substrate]]
+

Current revision

Crystal structure of mouse MTH1 with 8-oxo-dGTP

PDB ID 5mze

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools