6c22

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(New page: ==Capsid protein in the Staphylococcus aureus phage 80alpha-derived SaPI1 mature capsid== <StructureSection load='6c22' size='340' side='right' caption='6c22, [[Resolution|resolution]...)
Current revision (14:25, 13 March 2024) (edit) (undo)
 
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==Capsid protein in the Staphylococcus aureus phage 80alpha-derived SaPI1 mature capsid==
==Capsid protein in the Staphylococcus aureus phage 80alpha-derived SaPI1 mature capsid==
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<StructureSection load='6c22' size='340' side='right' caption='[[6c22]], [[Resolution|resolution]] 8.00&Aring;' scene=''>
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<SX load='6c22' size='340' side='right' viewer='molstar' caption='[[6c22]], [[Resolution|resolution]] 8.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6c22]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C22 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6C22 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6c22]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_virus_80alpha Staphylococcus virus 80alpha]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C22 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6C22 FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6c22 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6c22 OCA], [http://pdbe.org/6c22 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6c22 RCSB], [http://www.ebi.ac.uk/pdbsum/6c22 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6c22 ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 8&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6c22 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6c22 OCA], [https://pdbe.org/6c22 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6c22 RCSB], [https://www.ebi.ac.uk/pdbsum/6c22 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6c22 ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/A4ZFB3_9CAUD A4ZFB3_9CAUD]
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In the tailed bacteriophages, DNA is packaged into spherical procapsids, leading to expansion into angular, thin-walled mature capsids. In many cases, this maturation is accompanied by cleavage of the major capsid protein (CP) and other capsid-associated proteins, including the scaffolding protein (SP) that serves as a chaperone for the assembly process. Staphylococcus aureus bacteriophage 80alpha is capable of high frequency mobilization of mobile genetic elements called S. aureus pathogenicity islands (SaPIs), such as SaPI1. SaPI1 redirects the assembly pathway of 80alpha to form capsids that are smaller than those normally made by the phage alone. Both CP and SP of 80alpha are N-terminally processed by a host-encoded protease, Prp. We have analyzed phage mutants that express pre-cleaved or uncleavable versions of CP or SP, and show that the N-terminal sequence in SP is absolutely required for assembly, but does not need to be cleaved in order to produce viable capsids. Mutants with pre-cleaved or uncleavable CP display normal viability. We have used cryo-EM to solve the structures of mature capsids from an 80alpha mutant expressing uncleavable CP, and from wildtype SaPI1. Comparisons with structures of 80alpha and SaPI1 procapsids show that capsid maturation involves major conformational changes in CP, consistent with a release of the CP N-arm by SP. The hexamers reorganize during maturation to accommodate the different environments in the 80alpha and SaPI1 capsids.
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Cleavage and Structural Transitions during Maturation of Staphylococcus aureus Bacteriophage 80alpha and SaPI1 Capsids.,Kizziah JL, Manning KA, Dearborn AD, Wall EA, Klenow L, Hill RLL, Spilman MS, Stagg SM, Christie GE, Dokland T Viruses. 2017 Dec 16;9(12). pii: v9120384. doi: 10.3390/v9120384. PMID:29258203<ref>PMID:29258203</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6c22" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
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</StructureSection>
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</SX>
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[[Category: Dearborn, A D]]
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[[Category: Large Structures]]
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[[Category: Dokland, T]]
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[[Category: Staphylococcus virus 80alpha]]
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[[Category: Kizziah, J L]]
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[[Category: Dearborn AD]]
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[[Category: Hk97-like fold]]
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[[Category: Dokland T]]
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[[Category: Major capsid protein]]
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[[Category: Kizziah JL]]
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[[Category: Mature capsid]]
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[[Category: Virus]]
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Current revision

Capsid protein in the Staphylococcus aureus phage 80alpha-derived SaPI1 mature capsid

6c22, resolution 8.00Å

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