1w6i

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:37, 21 November 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==plasmepsin II-pepstatin A complex==
==plasmepsin II-pepstatin A complex==
-
<StructureSection load='1w6i' size='340' side='right' caption='[[1w6i]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
+
<StructureSection load='1w6i' size='340' side='right'caption='[[1w6i]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1w6i]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Plafa Plafa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W6I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W6I FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1w6i]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum Plasmodium falciparum] and [https://en.wikipedia.org/wiki/Streptomyces_argenteolus_subsp._toyonakensis Streptomyces argenteolus subsp. toyonakensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W6I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1W6I FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=IVA:ISOVALERIC+ACID'>IVA</scene>, <scene name='pdbligand=STA:STATINE'>STA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1j8j|1j8j]], [[1lee|1lee]], [[1lf2|1lf2]], [[1lf3|1lf3]], [[1lf4|1lf4]], [[1m43|1m43]], [[1me6|1me6]], [[1pfz|1pfz]], [[1sme|1sme]], [[1w6h|1w6h]], [[1xdh|1xdh]], [[1xe5|1xe5]], [[1xe6|1xe6]], [[2bju|2bju]], [[2bl3|2bl3]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IVA:ISOVALERIC+ACID'>IVA</scene>, <scene name='pdbligand=STA:STATINE'>STA</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Plasmepsin_II Plasmepsin II], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.39 3.4.23.39] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1w6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w6i OCA], [https://pdbe.org/1w6i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1w6i RCSB], [https://www.ebi.ac.uk/pdbsum/1w6i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1w6i ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w6i OCA], [http://pdbe.org/1w6i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1w6i RCSB], [http://www.ebi.ac.uk/pdbsum/1w6i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1w6i ProSAT]</span></td></tr>
+
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 14: Line 13:
<jmolCheckbox>
<jmolCheckbox>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w6/1w6i_consurf.spt"</scriptWhenChecked>
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w6/1w6i_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1w6i ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1w6i ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
 +
 +
==See Also==
 +
*[[Plasmepsin|Plasmepsin]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Plafa]]
+
[[Category: Large Structures]]
-
[[Category: Plasmepsin II]]
+
[[Category: Plasmodium falciparum]]
-
[[Category: Johansson, P O]]
+
[[Category: Streptomyces argenteolus subsp. toyonakensis]]
-
[[Category: Kvarnstroem, I]]
+
[[Category: Johansson P-O]]
-
[[Category: Lindberg, J]]
+
[[Category: Kvarnstroem I]]
-
[[Category: Rosenquist, A]]
+
[[Category: Lindberg J]]
-
[[Category: Samuelsson, B]]
+
[[Category: Rosenquist A]]
-
[[Category: Unge, T]]
+
[[Category: Samuelsson B]]
-
[[Category: Vrang, L]]
+
[[Category: Unge T]]
-
[[Category: Aspartic protease]]
+
[[Category: Vrang L]]
-
[[Category: Drug]]
+
-
[[Category: Glycoprotein]]
+
-
[[Category: Hydrolase-hydrolase inhibitor complex]]
+
-
[[Category: Malaria]]
+
-
[[Category: Plasmepsin]]
+

Current revision

plasmepsin II-pepstatin A complex

PDB ID 1w6i

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools