This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2x5d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:24, 20 December 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal Structure of a probable aminotransferase from Pseudomonas aeruginosa==
==Crystal Structure of a probable aminotransferase from Pseudomonas aeruginosa==
-
<StructureSection load='2x5d' size='340' side='right' caption='[[2x5d]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
+
<StructureSection load='2x5d' size='340' side='right'caption='[[2x5d]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2x5d]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseae Pseae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2X5D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2X5D FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2x5d]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2X5D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2X5D FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2x4j|2x4j]], [[2x4k|2x4k]], [[2x4l|2x4l]], [[2x5c|2x5c]], [[2x5f|2x5f]], [[2x5p|2x5p]], [[2x5r|2x5r]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2x5d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2x5d OCA], [http://pdbe.org/2x5d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2x5d RCSB], [http://www.ebi.ac.uk/pdbsum/2x5d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2x5d ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2x5d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2x5d OCA], [https://pdbe.org/2x5d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2x5d RCSB], [https://www.ebi.ac.uk/pdbsum/2x5d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2x5d ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9HV83_PSEAE Q9HV83_PSEAE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 31: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Pseae]]
+
[[Category: Large Structures]]
-
[[Category: Carter, L G]]
+
[[Category: Pseudomonas aeruginosa PAO1]]
-
[[Category: Johnson, K A]]
+
[[Category: Carter LG]]
-
[[Category: Liu, H]]
+
[[Category: Johnson KA]]
-
[[Category: Mcmahon, S A]]
+
[[Category: Liu H]]
-
[[Category: Naismith, J H]]
+
[[Category: Mcmahon SA]]
-
[[Category: Oke, M]]
+
[[Category: Naismith JH]]
-
[[Category: White, M F]]
+
[[Category: Oke M]]
-
[[Category: Transferase]]
+
[[Category: White MF]]

Current revision

Crystal Structure of a probable aminotransferase from Pseudomonas aeruginosa

PDB ID 2x5d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools