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| | ==Crystal Structure of UBIG== | | ==Crystal Structure of UBIG== |
| - | <StructureSection load='4kdc' size='340' side='right' caption='[[4kdc]], [[Resolution|resolution]] 2.09Å' scene=''> | + | <StructureSection load='4kdc' size='340' side='right'caption='[[4kdc]], [[Resolution|resolution]] 2.09Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4kdc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KDC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4KDC FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4kdc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KDC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4KDC FirstGlance]. <br> |
| - | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4kdr|4kdr]]</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.09Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ubiG, pufX, yfaB, b2232, JW2226 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4kdc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kdc OCA], [https://pdbe.org/4kdc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4kdc RCSB], [https://www.ebi.ac.uk/pdbsum/4kdc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4kdc ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4kdc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kdc OCA], [http://pdbe.org/4kdc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4kdc RCSB], [http://www.ebi.ac.uk/pdbsum/4kdc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4kdc ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/UBIG_ECOLI UBIG_ECOLI]] Non-specific O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway.<ref>PMID:10419476</ref> | + | [https://www.uniprot.org/uniprot/UBIG_ECOLI UBIG_ECOLI] Non-specific O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway.<ref>PMID:10419476</ref> |
| - | <div style="background-color:#fffaf0;">
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| - | == Publication Abstract from PubMed ==
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| - | UbiG and Coq3 (orthologue in eukaryotes) are SAM-MTases (S-adenosylmethionine-dependent methyltransferases) that catalyse both O-methylation steps in CoQ biosynthesis from prokaryotes to eukaryotes. However, the detailed molecular mechanism by which they function remains elusive. In the present paper, we report that UbiG/Coq3 defines a novel class of membrane-binding proteins. Escherichia coli UbiG binds specifically to liposomes containing PG (phosphatidylglycerol) or CL (cardiolipin, or diphosphatidylglycerol), two major lipid components of the E. coli plasma membrane, whereas human and yeast Coq3 display a strong preference for liposomes enriched with CL, a signature lipid of the mitochondrial membrane. The crystal structure of UbiG from E. coli was determined at 2.1 A (1 A = 0.1 nm) resolution. The structure exhibits a typical Class I SAM-MTase fold with several variations, including a unique insertion between strand beta5 and helix alpha10. This insertion is highly conserved and is required for membrane binding. Mutation of the key residues renders UbiG unable to efficiently bind liposome in vitro and the mutant fails to rescue the phenotype of DeltaubiG strain in vivo. Taken together, our results shed light on a novel biochemical function of the UbiG/Coq3 protein.
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| - | Structural and biochemical studies reveal UbiG/Coq3 as a class of novel membrane-binding proteins.,Zhu Y, Wu B, Zhang X, Fan X, Niu L, Li X, Wang J, Teng M Biochem J. 2015 Aug 15;470(1):105-14. doi: 10.1042/BJ20150329. Epub 2015 Jun 18. PMID:26251450<ref>PMID:26251450</ref>
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| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
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| - | </div>
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| - | <div class="pdbe-citations 4kdc" style="background-color:#fffaf0;"></div>
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| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Ecoli]] | + | [[Category: Escherichia coli K-12]] |
| - | [[Category: Li, X]] | + | [[Category: Large Structures]] |
| - | [[Category: Teng, M]] | + | [[Category: Li X]] |
| - | [[Category: Zhu, Y]] | + | [[Category: Teng M]] |
| - | [[Category: O-methylation]] | + | [[Category: Zhu Y]] |
| - | [[Category: Rossmann fold]]
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| - | [[Category: Transferase]]
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| - | [[Category: Ubiquinone biosynthesis]]
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