This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2dve

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:30, 25 October 2023) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2dve.jpg|left|200px]]
 
-
{{Structure
+
==Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 in Complex with Biotinyl-5'-AMP, Mutation Arg51Ala==
-
|PDB= 2dve |SIZE=350|CAPTION= <scene name='initialview01'>2dve</scene>, resolution 1.60&Aring;
+
<StructureSection load='2dve' size='340' side='right'caption='[[2dve]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=BT5:BIOTINYL-5-AMP'>BT5</scene>
+
<table><tr><td colspan='2'>[[2dve]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DVE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DVE FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Biotin--[acetyl-CoA-carboxylase]_ligase Biotin--[acetyl-CoA-carboxylase] ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.4.15 6.3.4.15] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
|GENE= birA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=53953 Pyrococcus horikoshii])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BT5:BIOTINYL-5-AMP'>BT5</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dve FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dve OCA], [https://pdbe.org/2dve PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dve RCSB], [https://www.ebi.ac.uk/pdbsum/2dve PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dve ProSAT], [https://www.topsan.org/Proteins/RSGI/2dve TOPSAN]</span></td></tr>
-
|RELATEDENTRY=[[1wq7|1wq7]], [[1wqw|1wqw]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dve FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dve OCA], [http://www.ebi.ac.uk/pdbsum/2dve PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2dve RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/O57883_PYRHO O57883_PYRHO]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/2dve_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dve ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 in Complex with Biotinyl-5'-AMP, Mutation Arg51Ala'''
+
==See Also==
-
 
+
*[[Biotin Protein Ligase 3D structures|Biotin Protein Ligase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2DVE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DVE OCA].
+
[[Category: Large Structures]]
-
[[Category: Biotin--[acetyl-CoA-carboxylase] ligase]]
+
[[Category: Pyrococcus horikoshii]]
[[Category: Pyrococcus horikoshii]]
-
[[Category: Single protein]]
+
[[Category: Bagautdinov B]]
-
[[Category: Bagautdinov, B.]]
+
[[Category: Kunishima N]]
-
[[Category: Kunishima, N.]]
+
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
-
[[Category: biotin biosynthesis]]
+
-
[[Category: dimer]]
+
-
[[Category: national project on protein structural and functional analyse]]
+
-
[[Category: nppsfa]]
+
-
[[Category: riken structural genomics/proteomics initiative]]
+
-
[[Category: rsgi]]
+
-
[[Category: structural genomic]]
+
-
[[Category: x-ray diffraction]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:40:03 2008''
+

Current revision

Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 in Complex with Biotinyl-5'-AMP, Mutation Arg51Ala

PDB ID 2dve

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools