5yjj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:32, 22 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of PNPase from Staphylococcus epidermidis==
==Crystal structure of PNPase from Staphylococcus epidermidis==
-
<StructureSection load='5yjj' size='340' side='right' caption='[[5yjj]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+
<StructureSection load='5yjj' size='340' side='right'caption='[[5yjj]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5yjj]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YJJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YJJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5yjj]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_epidermidis_ATCC_12228 Staphylococcus epidermidis ATCC 12228]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YJJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YJJ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Polyribonucleotide_nucleotidyltransferase Polyribonucleotide nucleotidyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.8 2.7.7.8] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yjj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yjj OCA], [http://pdbe.org/5yjj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yjj RCSB], [http://www.ebi.ac.uk/pdbsum/5yjj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yjj ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5yjj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yjj OCA], [https://pdbe.org/5yjj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5yjj RCSB], [https://www.ebi.ac.uk/pdbsum/5yjj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5yjj ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PNP_STAES PNP_STAES]] Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction.
+
[https://www.uniprot.org/uniprot/PNP_STAES PNP_STAES] Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 5yjj" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5yjj" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Polyribonucleotide nucleotidyltransferase]]
+
[[Category: Large Structures]]
-
[[Category: Gopal, B]]
+
[[Category: Staphylococcus epidermidis ATCC 12228]]
-
[[Category: Raj, R]]
+
[[Category: Gopal B]]
-
[[Category: Cytosolic protein]]
+
[[Category: Raj R]]
-
[[Category: Polyadenylation]]
+
-
[[Category: Polynucleotidyl phosphorylase]]
+
-
[[Category: Rna degradation]]
+

Current revision

Crystal structure of PNPase from Staphylococcus epidermidis

PDB ID 5yjj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools