This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2e6k
From Proteopedia
(Difference between revisions)
| (11 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2e6k.jpg|left|200px]] | ||
| - | + | ==X-ray structure of Thermus thermopilus HB8 TT0505== | |
| - | + | <StructureSection load='2e6k' size='340' side='right'caption='[[2e6k]], [[Resolution|resolution]] 2.09Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2e6k]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E6K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2E6K FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.09Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2e6k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e6k OCA], [https://pdbe.org/2e6k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2e6k RCSB], [https://www.ebi.ac.uk/pdbsum/2e6k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2e6k ProSAT], [https://www.topsan.org/Proteins/RSGI/2e6k TOPSAN]</span></td></tr> | |
| - | | | + | </table> |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/Q5SM35_THET8 Q5SM35_THET8] | |
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e6/2e6k_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2e6k ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | + | ==See Also== | |
| - | + | *[[Transketolase 3D structures|Transketolase 3D structures]] | |
| - | + | __TOC__ | |
| - | == | + | </StructureSection> |
| - | + | [[Category: Large Structures]] | |
| - | [[Category: | + | [[Category: Thermus thermophilus HB8]] |
| - | [[Category: Thermus thermophilus | + | [[Category: Agari Y]] |
| - | + | [[Category: Ebihara A]] | |
| - | [[Category: Agari | + | [[Category: Iino H]] |
| - | [[Category: Ebihara | + | [[Category: Kamitori S]] |
| - | [[Category: Iino | + | [[Category: Kanagawa M]] |
| - | [[Category: Kamitori | + | [[Category: Kuramitsu S]] |
| - | [[Category: Kanagawa | + | [[Category: Nakagawa N]] |
| - | [[Category: Kuramitsu | + | [[Category: Yokoyama S]] |
| - | [[Category: Nakagawa | + | [[Category: Yoshida H]] |
| - | + | ||
| - | [[Category: Yokoyama | + | |
| - | [[Category: Yoshida | + | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
X-ray structure of Thermus thermopilus HB8 TT0505
| |||||||||||

