2ebj

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[[Image:2ebj.jpg|left|200px]]
 
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{{Structure
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==Crystal structure of pyrrolidone carboxyl peptidase from Thermus thermophilus==
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|PDB= 2ebj |SIZE=350|CAPTION= <scene name='initialview01'>2ebj</scene>, resolution 1.90&Aring;
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<StructureSection load='2ebj' size='340' side='right'caption='[[2ebj]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND=
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<table><tr><td colspan='2'>[[2ebj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EBJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EBJ FirstGlance]. <br>
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyroglutamyl-peptidase_I Pyroglutamyl-peptidase I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.19.3 3.4.19.3] </span>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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|GENE= TTHA0888 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=274 Thermus thermophilus])
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ebj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ebj OCA], [https://pdbe.org/2ebj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ebj RCSB], [https://www.ebi.ac.uk/pdbsum/2ebj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ebj ProSAT], [https://www.topsan.org/Proteins/RSGI/2ebj TOPSAN]</span></td></tr>
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|DOMAIN=
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</table>
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|RELATEDENTRY=
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== Function ==
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ebj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ebj OCA], [http://www.ebi.ac.uk/pdbsum/2ebj PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2ebj RCSB]</span>
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[https://www.uniprot.org/uniprot/Q5SJW4_THET8 Q5SJW4_THET8] Removes 5-oxoproline from various penultimate amino acid residues except L-proline (By similarity).[SAAS:SAAS016125_004_005679]
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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'''Crystal structure of pyrrolidone carboxyl peptidase from Thermus thermophilus'''
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eb/2ebj_consurf.spt"</scriptWhenChecked>
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==About this Structure==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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2EBJ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EBJ OCA].
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Pyroglutamyl-peptidase I]]
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</jmolCheckbox>
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[[Category: Single protein]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ebj ConSurf].
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[[Category: Thermus thermophilus]]
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<div style="clear:both"></div>
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[[Category: Agari, Y.]]
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__TOC__
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[[Category: Karthe, P.]]
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</StructureSection>
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[[Category: Kumarevel, T S.]]
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[[Category: Large Structures]]
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[[Category: Kuramitsu, S.]]
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[[Category: Thermus thermophilus HB8]]
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[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
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[[Category: Agari Y]]
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[[Category: Yokoyama, S.]]
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[[Category: Karthe P]]
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[[Category: degradation of proteins and peptide]]
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[[Category: Kumarevel TS]]
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[[Category: hydrolase]]
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[[Category: Kuramitsu S]]
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[[Category: national project on protein structural and functional analyse]]
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[[Category: Yokoyama S]]
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[[Category: nppsfa]]
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[[Category: pyrrolidone carboxyl peptidase]]
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[[Category: riken structural genomics/proteomics initiative]]
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[[Category: rsgi]]
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[[Category: structural genomic]]
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[[Category: thermus thermophilus]]
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[[Category: ttha0888]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:46:33 2008''
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Current revision

Crystal structure of pyrrolidone carboxyl peptidase from Thermus thermophilus

PDB ID 2ebj

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