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| | ==Crystal structure of native ribT from Bacillus subtilis== | | ==Crystal structure of native ribT from Bacillus subtilis== |
| - | <StructureSection load='5xxs' size='340' side='right' caption='[[5xxs]], [[Resolution|resolution]] 2.09Å' scene=''> | + | <StructureSection load='5xxs' size='340' side='right'caption='[[5xxs]], [[Resolution|resolution]] 2.09Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5xxs]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacsu Bacsu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XXS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5XXS FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5xxs]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XXS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XXS FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.09Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ribT, BSU23240 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224308 BACSU])</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5xxs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xxs OCA], [http://pdbe.org/5xxs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xxs RCSB], [http://www.ebi.ac.uk/pdbsum/5xxs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xxs ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xxs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xxs OCA], [https://pdbe.org/5xxs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xxs RCSB], [https://www.ebi.ac.uk/pdbsum/5xxs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xxs ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/RIBT_BACSU RIBT_BACSU]] Involved in riboflavin biosynthesis. | + | [https://www.uniprot.org/uniprot/RIBT_BACSU RIBT_BACSU] Involved in riboflavin biosynthesis. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Bacsu]] | + | [[Category: Bacillus subtilis subsp. subtilis str. 168]] |
| - | [[Category: Karthikeyan, S]] | + | [[Category: Large Structures]] |
| - | [[Category: Srivastava, R]] | + | [[Category: Karthikeyan S]] |
| - | [[Category: Acetylation]] | + | [[Category: Srivastava R]] |
| - | [[Category: Coa]]
| + | |
| - | [[Category: Gnat]]
| + | |
| - | [[Category: Riboflavin]]
| + | |
| - | [[Category: Transferase]]
| + | |
| Structural highlights
Function
RIBT_BACSU Involved in riboflavin biosynthesis.
Publication Abstract from PubMed
In bacteria, biosynthesis of riboflavin occurs through a series of enzymatic steps starting with one molecule of GTP and two molecules of ribulose-5-phosphate. In Bacillus subtilis (B. subtilis) the genes (ribD/G, ribE, ribA, ribH and ribT) which are involved in riboflavin biosynthesis are organized in an operon referred as rib operon. All the genes of rib operon are characterized functionally except for ribT. The ribT gene with unknown function is found at the distal terminal of rib operon and annotated as a putative N-acetyltransferase. Here, we report the crystal structure of ribT from B. subtilis (bribT) complexed with coenzyme A (CoA) at 2.1A resolution determined by single wavelength anomalous dispersion method. Our structural study reveals that bribT is a member of GCN5-related N-acetyltransferase (GNAT) superfamily and contains all the four conserved structural motifs that have been in other members of GNAT superfamily. The members of GNAT family transfers the acetyl group from acetyl coenzyme A (AcCoA) to a variety of substrates. Moreover, the structural analysis reveals that the residues Glu-67 and Ser-107 are suitably positioned to act as a catalytic base and catalytic acid respectively suggesting that the catalysis by bribT may follow a direct transfer mechanism. Surprisingly, the mutation of a non-conserved amino acid residue Cys-112 to alanine or serine affected the binding of AcCoA to bribT, indicating a possible role of Cys-112 in the catalysis.
Structural characterization of ribT from Bacillus subtilis reveals it as a GCN5-related N-acetyltransferase.,Srivastava R, Kaur A, Sharma C, Karthikeyan S J Struct Biol. 2017 Dec 11. pii: S1047-8477(17)30229-0. doi:, 10.1016/j.jsb.2017.12.006. PMID:29241954[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Srivastava R, Kaur A, Sharma C, Karthikeyan S. Structural characterization of ribT from Bacillus subtilis reveals it as a GCN5-related N-acetyltransferase. J Struct Biol. 2017 Dec 11. pii: S1047-8477(17)30229-0. doi:, 10.1016/j.jsb.2017.12.006. PMID:29241954 doi:http://dx.doi.org/10.1016/j.jsb.2017.12.006
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