Sandbox Reserved 1369

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{{Sandbox_Reserved_HLSC322}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
{{Sandbox_Reserved_HLSC322}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
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==Your Heading Here (maybe something like 'Structure')==
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==EGFR kinase domain in complex with Mitogen-inducible gene 6 protein==
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<StructureSection load='1bna' size='340' side='right' caption='Caption for this structure' scene=''>
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<StructureSection load='4ZJV' size='340' side='right' caption='Caption for this structure' scene=''>
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This is a default text for your page ''''''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
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This is a protein complex formed from <scene name='77/777689/4zjv/1'>EGFR kinase domain in complex with Mitogen-inducible gene 6 protein</scene>. Mig-6 complexes with and inhibits EGFR. Mig-6 contains a protein domain that can interact with the EGFR protein family. EGFR catalyzes the phosphorylation of Mig-6 when the two proteins form a complex, and when this occurs, Mig-6 changes its structure and irreversibly inhibits the EGFR4.
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You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
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== Function ==
== Function ==
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EGFR plays a role in the metastasization and development of carcinomas, because it contributes to growth in epithelial tissue.The irreversible inhibition EGFR by Mig-6 will, in people with cancer, prevent the cancer from growing and progressing further. Therefore, Mig-6 regulates the activities of EGFR, so that growth does not get out of control.
== Disease ==
== Disease ==
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The Mig-6/EGFR protein complex has great importance to the prevention and suppression of epithelial tumors. Since EGFR promotes epithelial growth, and therefore the growth of epithelial cancers when they occur, the Mig-6/EGFR complex is essentially a tumor suppressing complex, because Mig-6 inhibits the function of EGFR
== Relevance ==
== Relevance ==
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Mig-6 is a feedback inhibitor that binds, inhibits, and drives internalization of ErbB-family receptors. Mig-6 inactivates the EGFR and thus is critical in better understanding human cancers. EGFR phosphorylates Mig6 on Y394 and that this phosphorylation is primed by prior phosphorylation of an adjacent residue, Y395, by Src.
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Somatic mutations in the EGFR kinase domain have been shown to drive lung adenocarcinoma, a specific type of lung cancer. Mig-6 is a target for phosphorylation by mutant EGFR’s and is a promising tumor suppressor for mutant-driven lung adenocarcinoma. During a research study, lung tumor formation progressed faster in mice lacking Mig-62. Interaction between Mig-6 and EGFR, stabilizes EGFR, inhibiting mutant EGFR, and preventing or delaying further growth of mutant EGFR-driven tumors.
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Studies have shown that there is a relationship between the deletion of the Mig-6 gene and the formation of certain types of gliomas.5 In addition, deletion of the Mig6-encoding gene in mice has been shown to hyperactivate EGFR signaling, leading to skin hyperplasia, a condition affecting the sebaceous glands, and tumor formation in skin, the lungs and other epithelial tissues.
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== Structural highlights ==
== Structural highlights ==
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Global Symmetry: Asymmetric - C12
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Global Stoichiometry: Hetero 2-mer - AB2
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The domain structure of Mig6 includes an N-terminal CRIB domain, a motif that mediates association with the Rho-family GTPase Cdc42 and a C-terminal ErbB-binding region, which is necessary and sufficient for binding and inhibition of EGFR7. In the Mig6-YpY structure, the kinase adopts an active conformation, and the Mig6 peptide interacts with the activation loop in an antiparallel manner.
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There were13 important binding residues from MIG-6_s1 and 9 residues from EGFR kinase with binding free energies less than-1 kcal/mol. The 13 residues of MIG-6_s1 comprise Ser337, Leu338, and Ser361 whereas the 9 residues of EGFR kinase were Thr885, Glu904, and Ile929. Some of these residues, such as Pro910, had the values of the binding free energies less than or equal to -4 kcal/mol. Five residues of MIG-6_s1, namely Leu342, <scene name='77/777689/Ser337/1'>Ser337</scene>, and seven residues of EGFR kinase, namely Glu907, had their binding free energies approximately -1.0 kcal/mol.
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These are the hydrogen bonds formed between residues <scene name='77/777689/Asn343/1'>Asn343</scene> and the residues Glu904, Gly906, Arg908, Gln911 and Ile929 of EGFR kinase. Strong, medium and weak hydrogen-bond interactions were defined as having simulated hydrogen bond occupancy of > 75%, 50–75%, and < 50%, respectively.
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This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
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We showed that there were six “hot spot” residues on EGFR kinase, namely Glu904, Glu907, Arg908, Gln911, Met928 and Ile929; and eight “hot spot” residues on MIG-6_s1, namely <scene name='77/777689/Leu338/3'>LEU338</scene>.
</StructureSection>
</StructureSection>
== References ==
== References ==
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<references/>
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<2. http://www.rcsb.org/structure/4ZJV
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3. https://www.ncbi.nlm.nih.gov/pubmed/25735773
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4. https://www.ncbi.nlm.nih.gov/pubmed/16377102
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5. https://www.ebi.ac.uk/pdbe/entry/pdb/4zjv/citations>

Current revision

This Sandbox is Reserved from January through July 31, 2018 for use in the course HLSC322: Principles of Genetics and Genomics taught by Genevieve Houston-Ludlam at the University of Maryland, College Park, USA. This reservation includes Sandbox Reserved 1311 through Sandbox Reserved 1430.
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EGFR kinase domain in complex with Mitogen-inducible gene 6 protein

Caption for this structure

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References

<2. http://www.rcsb.org/structure/4ZJV 3. https://www.ncbi.nlm.nih.gov/pubmed/25735773 4. https://www.ncbi.nlm.nih.gov/pubmed/16377102 5. https://www.ebi.ac.uk/pdbe/entry/pdb/4zjv/citations>

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