1ovg
From Proteopedia
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==M64V PNP +MePdr== | ==M64V PNP +MePdr== | ||
- | <StructureSection load='1ovg' size='340' side='right' caption='[[1ovg]], [[Resolution|resolution]] 2.20Å' scene=''> | + | <StructureSection load='1ovg' size='340' side='right'caption='[[1ovg]], [[Resolution|resolution]] 2.20Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1ovg]] is a 3 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1ovg]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OVG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OVG FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2Å</td></tr> |
- | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MDR:9-(2-DEOXY-BETA-D-RIBOFURANOSYL)-6-METHYLPURINE'>MDR</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | |
- | <tr id=' | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ovg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ovg OCA], [https://pdbe.org/1ovg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ovg RCSB], [https://www.ebi.ac.uk/pdbsum/1ovg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ovg ProSAT]</span></td></tr> |
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- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
- | [ | + | [https://www.uniprot.org/uniprot/DEOD_ECOLI DEOD_ECOLI] Cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules.[HAMAP-Rule:MF_01627] |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ovg ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ovg ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | Activation of prodrugs by Escherichia coli purine nucleoside phosphorylase (PNP) provides a method for selectively killing tumor cells expressing a transfected PNP gene. This gene therapy approach requires matching a prodrug and a known enzymatic activity present only in tumor cells. The specificity of the method relies on avoiding prodrug cleavage by enzymes already present in the host cells or the intestinal flora. Using crystallographic and computer modeling methods as guides, we have redesigned E. coli PNP to cleave new prodrug substrates more efficiently than does the wild-type enzyme. In particular, the M64V PNP mutant cleaves 9-(6-deoxy-alpha-L-talofuranosyl)-6-methylpurine with a kcat/Km over 100 times greater than for native E. coli PNP. In a xenograft tumor experiment, this compound caused regression of tumors expressing the M64V PNP gene. | ||
- | + | ==See Also== | |
- | + | *[[Purine nucleoside phosphorylase 3D structures|Purine nucleoside phosphorylase 3D structures]] | |
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Escherichia coli]] |
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: Allan | + | [[Category: Allan PW]] |
- | [[Category: Anand | + | [[Category: Anand R]] |
- | [[Category: Bennett | + | [[Category: Bennett EM]] |
- | [[Category: Ealick | + | [[Category: Ealick SE]] |
- | [[Category: Hassan | + | [[Category: Hassan AE]] |
- | [[Category: McPherson | + | [[Category: McPherson DT]] |
- | [[Category: Parker | + | [[Category: Parker PW]] |
- | [[Category: Secrist | + | [[Category: Secrist JA]] |
- | [[Category: Sorscher | + | [[Category: Sorscher EJ]] |
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Current revision
M64V PNP +MePdr
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Categories: Escherichia coli | Large Structures | Allan PW | Anand R | Bennett EM | Ealick SE | Hassan AE | McPherson DT | Parker PW | Secrist JA | Sorscher EJ