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2f2g

From Proteopedia

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[[Image:2f2g.gif|left|200px]]
 
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{{Structure
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==X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G16990==
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|PDB= 2f2g |SIZE=350|CAPTION= <scene name='initialview01'>2f2g</scene>, resolution 2.10&Aring;
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<StructureSection load='2f2g' size='340' side='right'caption='[[2f2g]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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|SITE= <scene name='pdbsite=AC1:So4+Binding+Site+For+Residue+B+1401'>AC1</scene>, <scene name='pdbsite=AC2:So4+Binding+Site+For+Residue+B+1402'>AC2</scene>, <scene name='pdbsite=AC3:So4+Binding+Site+For+Residue+A+1403'>AC3</scene>, <scene name='pdbsite=AC4:So4+Binding+Site+For+Residue+B+1404'>AC4</scene>, <scene name='pdbsite=AC5:Hmh+Binding+Site+For+Residue+A+1300'>AC5</scene> and <scene name='pdbsite=AC6:Hmh+Binding+Site+For+Residue+B+1301'>AC6</scene>
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=HMH:4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE'>HMH</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
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<table><tr><td colspan='2'>[[2f2g]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arath Arath]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1q4m 1q4m]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F2G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F2G FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HMH:4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE'>HMH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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|GENE= At3g16990 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0819 TenA], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam03070 TENA_THI-4]</span>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">At3g16990 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
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|RELATEDENTRY=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f2g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f2g OCA], [https://pdbe.org/2f2g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f2g RCSB], [https://www.ebi.ac.uk/pdbsum/2f2g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f2g ProSAT], [https://www.topsan.org/Proteins/CESG/2f2g TOPSAN]</span></td></tr>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f2g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f2g OCA], [http://www.ebi.ac.uk/pdbsum/2f2g PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2f2g RCSB]</span>
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</table>
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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'''X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G16990'''
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f2/2f2g_consurf.spt"</scriptWhenChecked>
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==About this Structure==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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2F2G is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. This structure supersedes the now removed PDB entry 1Q4M. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F2G OCA].
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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==Reference==
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2f2g ConSurf].
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Crystal structure of gene locus At3g16990 from Arabidopsis thaliana., Blommel PG, Smith DW, Bingman CA, Dyer DH, Rayment I, Holden HM, Fox BG, Phillips GN Jr, Proteins. 2004 Oct 1;57(1):221-2. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15326608 15326608]
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<div style="clear:both"></div>
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[[Category: Arabidopsis thaliana]]
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__TOC__
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[[Category: Single protein]]
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</StructureSection>
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[[Category: Bingman, C A.]]
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[[Category: Arath]]
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[[Category: Bitto, E.]]
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[[Category: Large Structures]]
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[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
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[[Category: Bingman, C A]]
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[[Category: Johnson, K A.]]
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[[Category: Bitto, E]]
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[[Category: Jr., G N.Phillips.]]
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[[Category: Structural genomic]]
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[[Category: Smith, D W.]]
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[[Category: Johnson, K A]]
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[[Category: Wesenberg, G W.]]
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[[Category: Phillips, G N]]
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[[Category: at3g16990]]
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[[Category: Smith, D W]]
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[[Category: center for eukaryotic structural genomic]]
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[[Category: Wesenberg, G W]]
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[[Category: center foreukaryotic structural genomic]]
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[[Category: At3g16990]]
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[[Category: cesg]]
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[[Category: Cesg]]
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[[Category: plant protein]]
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[[Category: Plant protein]]
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[[Category: protein structure initiative]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: psi]]
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[[Category: Tena/thi-4/pqqc family]]
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[[Category: structural genomic]]
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[[Category: Tena_thi-4 domain]]
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[[Category: tena/thi-4/pqqc family]]
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[[Category: tena_thi-4 domain]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:57:01 2008''
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Current revision

X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G16990

PDB ID 2f2g

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