We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

2f4p

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:06, 6 November 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2f4p.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of a cupin-like protein (tm1010) from thermotoga maritima msb8 at 1.90 A resolution==
-
|PDB= 2f4p |SIZE=350|CAPTION= <scene name='initialview01'>2f4p</scene>, resolution 1.900&Aring;
+
<StructureSection load='2f4p' size='340' side='right'caption='[[2f4p]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene>
+
<table><tr><td colspan='2'>[[2f4p]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F4P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F4P FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
|GENE= tm1010 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243274 Thermotoga maritima MSB8])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1917 COG1917]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f4p OCA], [https://pdbe.org/2f4p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f4p RCSB], [https://www.ebi.ac.uk/pdbsum/2f4p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f4p ProSAT], [https://www.topsan.org/Proteins/JCSG/2f4p TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f4p OCA], [http://www.ebi.ac.uk/pdbsum/2f4p PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2f4p RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q9X0A3_THEMA Q9X0A3_THEMA]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of a cupin-like protein (tm1010) from Thermotoga maritima at 1.90 A resolution'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f4/2f4p_consurf.spt"</scriptWhenChecked>
-
2F4P is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima_msb8 Thermotoga maritima msb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F4P OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Thermotoga maritima msb8]]
+
</jmolCheckbox>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2f4p ConSurf].
-
[[Category: hypothetical protein]]
+
<div style="clear:both"></div>
-
[[Category: jcsg]]
+
__TOC__
-
[[Category: joint center for structural genomic]]
+
</StructureSection>
-
[[Category: protein structure initiative]]
+
[[Category: Large Structures]]
-
[[Category: psi]]
+
[[Category: Thermotoga maritima MSB8]]
-
[[Category: structural genomic]]
+
-
[[Category: tm1010]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:57:52 2008''
+

Current revision

Crystal structure of a cupin-like protein (tm1010) from thermotoga maritima msb8 at 1.90 A resolution

PDB ID 2f4p

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2f4p"
Personal tools