2f5g

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:50, 13 March 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2f5g.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of IS200 transposase==
-
|PDB= 2f5g |SIZE=350|CAPTION= <scene name='initialview01'>2f5g</scene>, resolution 1.70&Aring;
+
<StructureSection load='2f5g' size='340' side='right'caption='[[2f5g]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2f5g]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus Saccharolobus solfataricus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F5G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F5G FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f5g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f5g OCA], [https://pdbe.org/2f5g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f5g RCSB], [https://www.ebi.ac.uk/pdbsum/2f5g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f5g ProSAT]</span></td></tr>
-
|DOMAIN=
+
</table>
-
|RELATEDENTRY=[[2f4f|2F4F]]
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f5g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f5g OCA], [http://www.ebi.ac.uk/pdbsum/2f5g PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2f5g RCSB]</span>
+
[https://www.uniprot.org/uniprot/Q97Y68_SACS2 Q97Y68_SACS2]
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Crystal structure of IS200 transposase'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f5/2f5g_consurf.spt"</scriptWhenChecked>
-
==Overview==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
IS200 transposases, present in many bacteria and Archaea, appear to be distinct from other groups of transposases. To provide a structural basis for understanding the action of IS200 transposases, we have determined the crystal structure of the SSO1474 protein from Sulfolobus solfataricus, a member of the IS200 family, in both Mn(2+)-bound and Mn(2+)-free forms. Its monomer fold is distinct from other classes of structurally characterized transposases. Two monomers form a tight dimer by exchanging the C-terminal alpha-helix and by merging the two central beta-sheets into a large beta-sheet. Glu(55), His(62), and four water molecules provide the direct coordination sphere of the catalytically essential metal ion in the Mn(2+)-bound structure. His(16), Asp(59), and His(60) also play important roles in maintaining the metal binding site. The catalytic site is formed at the interface between monomers. The candidate nucleophile in the transposition mechanism, strictly conserved Tyr(121) coming from the other monomer, is turned away from the active site, suggesting that a conformational change is likely to occur during the catalytic cycle.
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2f5g ConSurf].
-
2F5G is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F5G OCA].
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
Crystal structure of a metal ion-bound IS200 transposase., Lee HH, Yoon JY, Kim HS, Kang JY, Kim KH, Kim DJ, Ha JY, Mikami B, Yoon HJ, Suh SW, J Biol Chem. 2006 Feb 17;281(7):4261-6. Epub 2005 Dec 11. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16340015 16340015]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Saccharolobus solfataricus]]
-
[[Category: Sulfolobus solfataricus]]
+
[[Category: Kang JY]]
-
[[Category: Kang, J Y.]]
+
[[Category: Kim DJ]]
-
[[Category: Kim, D J.]]
+
[[Category: Kim HS]]
-
[[Category: Kim, H S.]]
+
[[Category: Kim KH]]
-
[[Category: Kim, K H.]]
+
[[Category: Lee HH]]
-
[[Category: Lee, H H.]]
+
[[Category: Suh SW]]
-
[[Category: Suh, S W.]]
+
[[Category: Yoon JY]]
-
[[Category: Yoon, J Y.]]
+
-
[[Category: dimer]]
+
-
[[Category: stem-loop binding]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:58:13 2008''
+

Current revision

Crystal structure of IS200 transposase

PDB ID 2f5g

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2f5g"
Personal tools