This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1rgy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:04, 23 August 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Citrobacter freundii GN346 Class C beta-Lactamase Complexed with Transition-State Analog of Cefotaxime==
==Citrobacter freundii GN346 Class C beta-Lactamase Complexed with Transition-State Analog of Cefotaxime==
-
<StructureSection load='1rgy' size='340' side='right' caption='[[1rgy]], [[Resolution|resolution]] 1.52&Aring;' scene=''>
+
<StructureSection load='1rgy' size='340' side='right'caption='[[1rgy]], [[Resolution|resolution]] 1.52&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1rgy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_freundii"_braak_1928 "bacterium freundii" braak 1928]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RGY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RGY FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1rgy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Citrobacter_freundii Citrobacter freundii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RGY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RGY FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=PTX:{[(2E)-2-(2-AMINO-1,3-THIAZOL-4-YL)-2-(METHOXYIMINO)ETHANOYL]AMINO}METHYLPHOSPHONIC+ACID'>PTX</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.52&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BLA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=546 "Bacterium freundii" Braak 1928])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=PTX:{[(2E)-2-(2-AMINO-1,3-THIAZOL-4-YL)-2-(METHOXYIMINO)ETHANOYL]AMINO}METHYLPHOSPHONIC+ACID'>PTX</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-lactamase Beta-lactamase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.6 3.5.2.6] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rgy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rgy OCA], [https://pdbe.org/1rgy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rgy RCSB], [https://www.ebi.ac.uk/pdbsum/1rgy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rgy ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rgy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rgy OCA], [http://pdbe.org/1rgy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rgy RCSB], [http://www.ebi.ac.uk/pdbsum/1rgy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1rgy ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/AMPC_CITFR AMPC_CITFR]] This protein is a serine beta-lactamase with a substrate specificity for cephalosporins.
+
[https://www.uniprot.org/uniprot/AMPC_CITFR AMPC_CITFR] This protein is a serine beta-lactamase with a substrate specificity for cephalosporins.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 34: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacterium freundii braak 1928]]
+
[[Category: Citrobacter freundii]]
-
[[Category: Beta-lactamase]]
+
[[Category: Large Structures]]
-
[[Category: Knox, J R]]
+
[[Category: Knox JR]]
-
[[Category: Kumar, S]]
+
[[Category: Kumar S]]
-
[[Category: Nukaga, K]]
+
[[Category: Nukaga K]]
-
[[Category: Nukaga, M]]
+
[[Category: Nukaga M]]
-
[[Category: Pratt, R F]]
+
[[Category: Pratt RF]]
-
[[Category: Beta-lactam antibiotic]]
+
-
[[Category: Cephalosporinase]]
+
-
[[Category: Drug design]]
+
-
[[Category: Enzyme inhibition]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Phosphonate]]
+

Current revision

Citrobacter freundii GN346 Class C beta-Lactamase Complexed with Transition-State Analog of Cefotaxime

PDB ID 1rgy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools