6cd8

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==Complex of GID4 fragment with short peptide==
==Complex of GID4 fragment with short peptide==
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<StructureSection load='6cd8' size='340' side='right' caption='[[6cd8]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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<StructureSection load='6cd8' size='340' side='right'caption='[[6cd8]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6cd8]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CD8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6CD8 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6cd8]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CD8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6CD8 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6cd8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cd8 OCA], [http://pdbe.org/6cd8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6cd8 RCSB], [http://www.ebi.ac.uk/pdbsum/6cd8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6cd8 ProSAT]</span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6cd8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cd8 OCA], [https://pdbe.org/6cd8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6cd8 RCSB], [https://www.ebi.ac.uk/pdbsum/6cd8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6cd8 ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/GID4_HUMAN GID4_HUMAN]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The N-end rule pathway senses the N-terminal destabilizing residues of degradation substrates for the ubiquitin-proteasome system, whose integrity shields against various human syndromes including cancer and cardiovascular diseases. GID4, a subunit of the ubiquitin ligase GID complex, has been recently identified as the N-recognin of the new branch of the N-end rule pathway responsible for recognizing substrates bearing N-terminal proline residues (Pro/N-degrons). However, the molecular mechanism of GID4-mediated Pro/N-degron recognition remains largely unexplored. Here, we report the first crystal structures of human GID4 alone and in complex with various Pro/N-degrons. Our complex crystal structures, together with biophysical analyses, delineate the GID4-mediated Pro/N-degron recognition mechanism and substrate selection criteria for the Pro/N-end rule pathway. These mechanistic data on the Pro/N-recognin activity of GID4 will serve as a foundation to facilitate the identification of authentic physiological substrates as well as the development of inhibitors of therapeutic values for the Pro/N-end rule pathway.
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Molecular basis of GID4-mediated recognition of degrons for the Pro/N-end rule pathway.,Dong C, Zhang H, Li L, Tempel W, Loppnau P, Min J Nat Chem Biol. 2018 May;14(5):466-473. doi: 10.1038/s41589-018-0036-1. Epub 2018 , Apr 9. PMID:29632410<ref>PMID:29632410</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6cd8" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Arrowsmith, C H]]
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[[Category: Homo sapiens]]
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[[Category: Bountra, C]]
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[[Category: Large Structures]]
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[[Category: Dong, C]]
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[[Category: Synthetic construct]]
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[[Category: Edwards, A M]]
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[[Category: Arrowsmith CH]]
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[[Category: Min, J]]
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[[Category: Bountra C]]
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[[Category: Structural genomic]]
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[[Category: Dong C]]
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[[Category: Tempel, W]]
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[[Category: Edwards AM]]
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[[Category: Peptide binding protein]]
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[[Category: Min J]]
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[[Category: Sgc]]
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[[Category: Tempel W]]

Current revision

Complex of GID4 fragment with short peptide

PDB ID 6cd8

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