6ck7
From Proteopedia
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==Crystal structure of a peptide deformylase from Legionella pneumophila bound to actinonin== | ==Crystal structure of a peptide deformylase from Legionella pneumophila bound to actinonin== | ||
- | <StructureSection load='6ck7' size='340' side='right' caption='[[6ck7]], [[Resolution|resolution]] 1.65Å' scene=''> | + | <StructureSection load='6ck7' size='340' side='right'caption='[[6ck7]], [[Resolution|resolution]] 1.65Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[6ck7]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CK7 OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[6ck7]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Legionella_pneumophila Legionella pneumophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CK7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6CK7 FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65Å</td></tr> |
- | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BB2:ACTINONIN'>BB2</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
- | < | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ck7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ck7 OCA], [https://pdbe.org/6ck7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ck7 RCSB], [https://www.ebi.ac.uk/pdbsum/6ck7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ck7 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
- | [ | + | [https://www.uniprot.org/uniprot/Q5ZSC4_LEGPH Q5ZSC4_LEGPH] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163] |
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Legionella pneumophila serogroup 1 is the primary causative agent of Legionnaires' disease, a rare but severe respiratory infection. While the fatality rate of Legionnaires' disease is low in the general population, it is more pronounced in vulnerable communities such as the immunocompromised. Thus, the development of new antimicrobials is of interest for use when existing antibiotics may not be applicable. Peptide deformylases (PDFs) have been under continued investigation as targets for novel antimicrobial compounds. PDF plays an essential role in protein synthesis, removing the N-terminal formyl group from new polypeptides, and is required for growth in most bacteria. Here, we report two crystal structures of L. pneumophila serogroup 1 PDF (LpPDF) bound to either Ni(2+), an active state, or inhibited by actinonin and Zn(2+); the structures were determined to 1.5 and 1.65 A resolution, respectively, and were solved by the Seattle Structural Genomics Center for Infectious Disease (SSGCID). The SSGCID is charged with determining structures of biologically important proteins and molecules from human pathogens. As actinonin is an antimicrobial natural product that has been used as a reference compound in drug development, these structures will help support the ongoing drug-development process. | ||
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+ | Structures of Legionella pneumophila serogroup 1 peptide deformylase bound to nickel(II) and actinonin.,Nguyen CL, Fan W, Fisher S, Matthews K, Norman JO, Abendroth J, Barrett KF, Craig JK, Edwards TE, Lorimer DD, McLaughlin KJ Acta Crystallogr F Struct Biol Commun. 2025 Apr 1;81(Pt 4):163-170. doi: , 10.1107/S2053230X25001876. Epub 2025 Mar 17. PMID:40091854<ref>PMID:40091854</ref> | ||
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+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6ck7" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: | + | [[Category: Legionella pneumophila]] |
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Current revision
Crystal structure of a peptide deformylase from Legionella pneumophila bound to actinonin
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