1syy
From Proteopedia
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| ==Crystal structure of the R2 subunit of ribonucleotide reductase from Chlamydia trachomatis== | ==Crystal structure of the R2 subunit of ribonucleotide reductase from Chlamydia trachomatis== | ||
| - | <StructureSection load='1syy' size='340' side='right' caption='[[1syy]], [[Resolution|resolution]] 1.70Å' scene=''> | + | <StructureSection load='1syy' size='340' side='right'caption='[[1syy]], [[Resolution|resolution]] 1.70Å' scene=''> | 
| == Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1syy]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1syy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlamydia_trachomatis Chlamydia trachomatis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SYY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SYY FirstGlance]. <br> | 
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> | 
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PB:LEAD+(II)+ION'>PB</scene></td></tr> | 
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1syy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1syy OCA], [https://pdbe.org/1syy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1syy RCSB], [https://www.ebi.ac.uk/pdbsum/1syy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1syy ProSAT]</span></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
| </table> | </table> | ||
| == Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/RIR2_CHLTR RIR2_CHLTR] Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity). | 
| == Evolutionary Conservation == | == Evolutionary Conservation == | ||
| [[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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| </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1syy ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1syy ConSurf]. | ||
| <div style="clear:both"></div> | <div style="clear:both"></div> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | Ribonucleotide reductase (RNR) synthesizes the deoxyribonucleotides for DNA synthesis. The R2 protein of normal class I ribonucleotide reductases contains a diiron site that produces a stable tyrosyl free radical, essential for enzymatic activity. Structural and electron paramagnetic resonance studies of R2 from Chlamydia trachomatis reveal a protein lacking a tyrosyl radical site. Instead, the protein yields an iron-coupled radical upon reconstitution. The coordinating structure of the diiron site is similar to that of diiron oxidases/monoxygenases and supports a role for this radical in the RNR mechanism. The specific ligand pattern in the C. trachomatis R2 metal site characterizes a new group of R2 proteins that so far has been found in eight organisms, three of which are human pathogens. | ||
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| - | The radical site in chlamydial ribonucleotide reductase defines a new R2 subclass.,Hogbom M, Stenmark P, Voevodskaya N, McClarty G, Graslund A, Nordlund P Science. 2004 Jul 9;305(5681):245-8. PMID:15247479<ref>PMID:15247479</ref> | ||
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| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 1syy" style="background-color:#fffaf0;"></div> | ||
| ==See Also== | ==See Also== | ||
| - | *[[Ribonucleotide reductase|Ribonucleotide reductase]] | + | *[[Ribonucleotide reductase 3D structures|Ribonucleotide reductase 3D structures]] | 
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| __TOC__ | __TOC__ | ||
| </StructureSection> | </StructureSection> | ||
| - | [[Category:  | + | [[Category: Chlamydia trachomatis]] | 
| - | [[Category: Graslund | + | [[Category: Large Structures]] | 
| - | [[Category: Hogbom | + | [[Category: Graslund A]] | 
| - | [[Category: McClarty | + | [[Category: Hogbom M]] | 
| - | [[Category: Nordlund | + | [[Category: McClarty G]] | 
| - | [[Category: Stenmark | + | [[Category: Nordlund P]] | 
| - | [[Category: Voevodskaya | + | [[Category: Stenmark P]] | 
| - | + | [[Category: Voevodskaya N]] | |
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Current revision
Crystal structure of the R2 subunit of ribonucleotide reductase from Chlamydia trachomatis
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