1ryk

From Proteopedia

(Difference between revisions)

Current revision

Solution NMR Structure Protein yjbJ from Escherichia coli. Northeast Structural Genomics Consortium Target ET93; Ontario Centre for Structural Proteomics target EC0298_1_69;

Structural highlights

1ryk is a 1 chain structure with sequence from Escherichia coli. This structure supersedes the now removed PDB entry 1jyg. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	Solution NMR
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

YJBJ_ECOLI

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

The influx of genomic sequence information has led to the concept of structural proteomics, the determination of protein structures on a genome-wide scale. Here we describe an approach to structural proteomics of small proteins using NMR spectroscopy. Over 500 small proteins from several organisms were cloned, expressed, purified, and evaluated by NMR. Although there was variability among proteomes, overall 20% of these proteins were found to be readily amenable to NMR structure determination. NMR sample preparation was centralized in one facility, and a distributive approach was used for NMR data collection and analysis. Twelve structures are reported here as part of this approach, which allowed us to infer putative functions for several conserved hypothetical proteins.

An NMR approach to structural proteomics.,Yee A, Chang X, Pineda-Lucena A, Wu B, Semesi A, Le B, Ramelot T, Lee GM, Bhattacharyya S, Gutierrez P, Denisov A, Lee CH, Cort JR, Kozlov G, Liao J, Finak G, Chen L, Wishart D, Lee W, McIntosh LP, Gehring K, Kennedy MA, Edwards AM, Arrowsmith CH Proc Natl Acad Sci U S A. 2002 Feb 19;99(4):1825-30. PMID:11854485^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Yee A, Chang X, Pineda-Lucena A, Wu B, Semesi A, Le B, Ramelot T, Lee GM, Bhattacharyya S, Gutierrez P, Denisov A, Lee CH, Cort JR, Kozlov G, Liao J, Finak G, Chen L, Wishart D, Lee W, McIntosh LP, Gehring K, Kennedy MA, Edwards AM, Arrowsmith CH. An NMR approach to structural proteomics. Proc Natl Acad Sci U S A. 2002 Feb 19;99(4):1825-30. PMID:11854485 doi:10.1073/pnas.042684599

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ryk"

@@ Line 1: / Line 1: @@
 ==Solution NMR Structure Protein yjbJ from Escherichia coli. Northeast Structural Genomics Consortium Target ET93; Ontario Centre for Structural Proteomics target EC0298_1_69;==
-<StructureSection load='1ryk' size='340' side='right' caption='[[1ryk]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='1ryk' size='340' side='right'caption='[[1ryk]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1ryk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1jyg 1jyg]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RYK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RYK FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1ryk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1jyg 1jyg]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RYK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RYK FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1jyg|1jyg]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">YJBJ, B4045, Z5644, ECS5028, SF4160, S3571 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ryk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ryk OCA], [https://pdbe.org/1ryk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ryk RCSB], [https://www.ebi.ac.uk/pdbsum/1ryk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ryk ProSAT], [https://www.topsan.org/Proteins/NESGC/1ryk TOPSAN]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ryk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ryk OCA], [http://pdbe.org/1ryk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ryk RCSB], [http://www.ebi.ac.uk/pdbsum/1ryk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ryk ProSAT], [http://www.topsan.org/Proteins/NESGC/1ryk TOPSAN]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/YJBJ_ECOLI YJBJ_ECOLI]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 31: / Line 32: @@
 __TOC__
 </StructureSection>
-[[Category: Bacillus coli migula 1895]]
+[[Category: Escherichia coli]]
-[[Category: Arrowsmith, C H]]
+[[Category: Large Structures]]
-[[Category: Cort, J R]]
+[[Category: Arrowsmith CH]]
-[[Category: Edwards, A M]]
+[[Category: Cort JR]]
-[[Category: Kennedy, M A]]
+[[Category: Edwards AM]]
-[[Category: Liao, J]]
+[[Category: Kennedy MA]]
-[[Category: Structural genomic]]
+[[Category: Liao J]]
-[[Category: Pineda-Lucena, A]]
+[[Category: Pineda-Lucena A]]
-[[Category: Wu, B]]
+[[Category: Wu B]]
-[[Category: Yee, A]]
+[[Category: Yee A]]
-[[Category: Alpha protein]]
-[[Category: Nesg]]
-[[Category: Ocsp]]
-[[Category: PSI, Protein structure initiative]]
-[[Category: Unknown function]]

1ryk

From Proteopedia

Current revision

Solution NMR Structure Protein yjbJ from Escherichia coli. Northeast Structural Genomics Consortium Target ET93; Ontario Centre for Structural Proteomics target EC0298_1_69;

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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