5zg4

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'''Unreleased structure'''
 
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The entry 5zg4 is ON HOLD
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==Crystal Structure of Triosephosphate isomerase SAD deletion mutant from Opisthorchis viverrini==
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<StructureSection load='5zg4' size='340' side='right'caption='[[5zg4]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5zg4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Opisthorchis_viverrini Opisthorchis viverrini]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZG4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ZG4 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.746&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5zg4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zg4 OCA], [https://pdbe.org/5zg4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5zg4 RCSB], [https://www.ebi.ac.uk/pdbsum/5zg4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5zg4 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A074Z863_9TREM A0A074Z863_9TREM]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Opisthorchis viverrini, a parasitic trematode, was recategorized as a group 1 biological carcinogen because it causes opisthorchiasis, which may result in cholangiocarcinoma. A new strategy for controlling opisthorchiasis is needed because of issues such as drug resistance and reinfection. Triosephosphate isomerase (TIM), a key enzyme in energy metabolism, is regarded as a potential drug target and vaccine candidate against various pathogens. Here, we determined the crystal structures of wild-type and 3 variants of TIMs from O. viverrini (OvTIM) at high resolution. The unique tripeptide of parasite trematodes, the SAD motif, was located on the surface of OvTIM and contributed to forming a 310-helix of the following loop in a sequence-independent manner. Through thermal stability and structural analyses of OvTIM variants, we found that the SAD motif induced local structural alterations of the surface and was involved in the overall stability of OvTIM in a complementary manner with another parasite-specific residue, N115. Comparison of the surface characteristics between OvTIM and Homo sapiens TIM (HsTIM) and structure-based epitope prediction suggested that the SAD motif functions as an epitope.
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Authors: Son, J., Kim, S., Kim, S., Lee, H., Lee, M.R., Hwang, K.Y.
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Structural Analysis of an Epitope Candidate of Triosephosphate Isomerase in Opisthorchis viverrini.,Son J, Kim S, Kim SE, Lee H, Lee MR, Hwang KY Sci Rep. 2018 Oct 10;8(1):15075. doi: 10.1038/s41598-018-33479-8. PMID:30305716<ref>PMID:30305716</ref>
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Description: Crystal Structure of Triosephosphate isomerase SAD deletion mutant from Clonorchis sinensis
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Kim, S]]
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<div class="pdbe-citations 5zg4" style="background-color:#fffaf0;"></div>
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[[Category: Lee, H]]
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[[Category: Hwang, K.Y]]
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==See Also==
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[[Category: Lee, M.R]]
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*[[Triose phosphate isomerase 3D structures|Triose phosphate isomerase 3D structures]]
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[[Category: Son, J]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Opisthorchis viverrini]]
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[[Category: Hwang KY]]
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[[Category: Kim S]]
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[[Category: Kim SE]]
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[[Category: Lee H]]
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[[Category: Lee MR]]
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[[Category: Son J]]

Current revision

Crystal Structure of Triosephosphate isomerase SAD deletion mutant from Opisthorchis viverrini

PDB ID 5zg4

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