This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5dm9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (21:49, 28 June 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==XFEL structure of hen egg-white lysozyme solved using a droplet injector at SACLA==
==XFEL structure of hen egg-white lysozyme solved using a droplet injector at SACLA==
-
<StructureSection load='5dm9' size='340' side='right' caption='[[5dm9]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+
<StructureSection load='5dm9' size='340' side='right'caption='[[5dm9]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5dm9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DM9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DM9 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5dm9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DM9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DM9 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dm9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dm9 OCA], [http://pdbe.org/5dm9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dm9 RCSB], [http://www.ebi.ac.uk/pdbsum/5dm9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dm9 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dm9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dm9 OCA], [https://pdbe.org/5dm9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dm9 RCSB], [https://www.ebi.ac.uk/pdbsum/5dm9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dm9 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
+
[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 5dm9" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5dm9" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Lysozyme 3D structures|Lysozyme 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 24: Line 27:
</StructureSection>
</StructureSection>
[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
-
[[Category: Lysozyme]]
+
[[Category: Large Structures]]
-
[[Category: Kobayashi, J]]
+
[[Category: Kobayashi J]]
-
[[Category: Nango, E]]
+
[[Category: Nango E]]
-
[[Category: Hydrolase]]
+
-
[[Category: Serial femtosecond crystallography]]
+

Current revision

XFEL structure of hen egg-white lysozyme solved using a droplet injector at SACLA

PDB ID 5dm9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools