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| | ==Solution Structure of a Loop Truncated Mutant from D. gigas Rubredoxin, NMR== | | ==Solution Structure of a Loop Truncated Mutant from D. gigas Rubredoxin, NMR== |
| - | <StructureSection load='1spw' size='340' side='right' caption='[[1spw]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='1spw' size='340' side='right'caption='[[1spw]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[1spw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_19364 Atcc 19364]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SPW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SPW FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1spw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Megalodesulfovibrio_gigas Megalodesulfovibrio gigas]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SPW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SPW FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1spw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1spw OCA], [http://pdbe.org/1spw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1spw RCSB], [http://www.ebi.ac.uk/pdbsum/1spw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1spw ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1spw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1spw OCA], [https://pdbe.org/1spw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1spw RCSB], [https://www.ebi.ac.uk/pdbsum/1spw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1spw ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/RUBR_DESGI RUBR_DESGI]] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule. Electron acceptor for cytoplasmic lactate dehydrogenase. | + | [https://www.uniprot.org/uniprot/RUBR_MEGGA RUBR_MEGGA] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule. Electron acceptor for cytoplasmic lactate dehydrogenase. |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| | </div> | | </div> |
| | <div class="pdbe-citations 1spw" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 1spw" style="background-color:#fffaf0;"></div> |
| | + | |
| | + | ==See Also== |
| | + | *[[Rubredoxin 3D structures|Rubredoxin 3D structures]] |
| | + | *[[Rubredoxin PDB structures|Rubredoxin PDB structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Atcc 19364]] | + | [[Category: Large Structures]] |
| - | [[Category: Lamosa, P]] | + | [[Category: Megalodesulfovibrio gigas]] |
| - | [[Category: LeGall, J]] | + | [[Category: Lamosa P]] |
| - | [[Category: Pais, T M]] | + | [[Category: LeGall J]] |
| - | [[Category: Santos, H]] | + | [[Category: Pais TM]] |
| - | [[Category: Santos, W dos]] | + | [[Category: Santos H]] |
| - | [[Category: Turner, D L]] | + | [[Category: Turner DL]] |
| - | [[Category: Electron transport]] | + | [[Category: Dos Santos W]] |
| - | [[Category: Truncated loop]]
| + | |
| Structural highlights
Function
RUBR_MEGGA Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule. Electron acceptor for cytoplasmic lactate dehydrogenase.
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Despite their high sequence homology, rubredoxins from Desulfovibrio gigas and D. desulfuricans are stabilized to very different extents by compatible solutes such as diglycerol phosphate, the major osmolyte in the hyperthermophilic archaeon Archaeoglobus fulgidus[Lamosa P, Burke A, Peist R, Huber R, Liu M Y, Silva G, Rodrigues-Pousada C, LeGall J, Maycock C and Santos H (2000) Appl Environ Microbiol66, 1974-1979]. The principal structural difference between these two proteins is the absence of the hairpin loop in the rubredoxin from D. desulfuricans. Therefore, mutants of D. gigas rubredoxin bearing deletions in the loop region were constructed to investigate the importance of this structural feature on protein intrinsic stability, as well as on its capacity to undergo stabilization by compatible solutes. The three-dimensional structure of the mutant bearing the largest deletion, Delta17/29, was determined by 1H-NMR, demonstrating that, despite the drastic deletion, the main structural features were preserved. The dependence of the NH chemical shifts on temperature and solute concentration (diglycerol phosphate or mannosylglycerate) provide evidence of subtle conformational changes induced by the solute. The kinetic stability (as assessed from the absorption decay at 494 nm) of six mutant rubredoxins was determined at 90 degrees C and the stabilizing effect exerted by both solutes was assessed. The extent of protection conferred by each solute was highly dependent on the specific mutant examined: while the half-life for iron release in the wild-type D. gigas rubredoxin increased threefold in the presence of 0.1 M diglycerol phosphate, mutant Delta23/29 was destabilized. This study provides evidence for solute-induced compaction of the protein structure and occurrence of weak, specific interactions with the protein surface. The relevance of these findings to our understanding of the molecular basis for protein stabilization is discussed.
Structural determinants of protein stabilization by solutes. The important of the hairpin loop in rubredoxins.,Pais TM, Lamosa P, dos Santos W, Legall J, Turner DL, Santos H FEBS J. 2005 Feb;272(4):999-1011. PMID:15691333[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Pais TM, Lamosa P, dos Santos W, Legall J, Turner DL, Santos H. Structural determinants of protein stabilization by solutes. The important of the hairpin loop in rubredoxins. FEBS J. 2005 Feb;272(4):999-1011. PMID:15691333 doi:10.1111/j.1742-4658.2004.04534.x
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