6g01

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(New page: '''Unreleased structure''' The entry 6g01 is ON HOLD Authors: Pachl, P., Pokorna, J. Description: Complex of neuraminidase from H1N1 influenza virus with tamiphosphor monomethyl ester ...)
Current revision (09:57, 23 October 2024) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 6g01 is ON HOLD
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==Complex of neuraminidase from H1N1 influenza virus with tamiphosphor monomethyl ester==
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<StructureSection load='6g01' size='340' side='right'caption='[[6g01]], [[Resolution|resolution]] 1.61&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6g01]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Influenza_A_virus_(A/Texas/17/2009(H1N1)) Influenza A virus (A/Texas/17/2009(H1N1))]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6G01 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6G01 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.61&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=EEW:[(3~{R},4~{R},5~{S})-4-acetamido-5-azanyl-3-pentan-3-yloxy-cyclohexen-1-yl]-methoxy-phosphinic+acid'>EEW</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6g01 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6g01 OCA], [https://pdbe.org/6g01 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6g01 RCSB], [https://www.ebi.ac.uk/pdbsum/6g01 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6g01 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/C6KP13_9INFA C6KP13_9INFA] Catalyzes the removal of terminal sialic acid residues from viral and cellular glycoconjugates. Cleaves off the terminal sialic acids on the glycosylated HA during virus budding to facilitate virus release. Additionally helps virus spread through the circulation by further removing sialic acids from the cell surface. These cleavages prevent self-aggregation and ensure the efficient spread of the progeny virus from cell to cell. Otherwise, infection would be limited to one round of replication. Described as a receptor-destroying enzyme because it cleaves a terminal sialic acid from the cellular receptors. May facilitate viral invasion of the upper airways by cleaving the sialic acid moities on the mucin of the airway epithelial cells. Likely to plays a role in the budding process through its association with lipid rafts during intracellular transport. May additionally display a raft-association independent effect on budding. Plays a role in the determination of host range restriction on replication and virulence. Sialidase activity in late endosome/lysosome traffic seems to enhance virus replication.[HAMAP-Rule:MF_04071]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Influenza neuraminidase is responsible for the escape of new viral particles from the infected cell surface. Several neuraminidase inhibitors are used clinically to treat patients or stockpiled for emergencies. However, the increasing development of viral resistance against approved inhibitors has underscored the need for the development of new antivirals effective against resistant influenza strains. A facile, sensitive, and inexpensive screening method would help achieve this goal. Recently, we described a multiwell plate-based DNA-linked inhibitor antibody assay (DIANA). This highly sensitive method can quantify femtomolar concentrations of enzymes. DIANA also has been applied to high-throughput enzyme inhibitor screening, allowing the evaluation of inhibition constants from a single inhibitor concentration. Here, we report the design, synthesis, and structural characterization of a tamiphosphor derivative linked to a reporter DNA oligonucleotide for the development of a DIANA-type assay to screen potential influenza neuraminidase inhibitors. The neuraminidase is first captured by an immobilized antibody, and the test compound competes for binding to the enzyme with the oligo-linked detection probe, which is then quantified by qPCR. We validated this novel assay by comparing it with the standard fluorometric assay and demonstrated its usefulness for sensitive neuraminidase detection as well as high-throughput screening of potential new neuraminidase inhibitors.
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Authors: Pachl, P., Pokorna, J.
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DNA-linked inhibitor antibody assay (DIANA) as a new method for screening influenza neuraminidase inhibitors.,Kozisek M, Navratil V, Rojikova K, Pokorna J, Berenguer Albinana C, Pachl P, Zemanova J, Machara A, Sacha P, Hudlicky J, Cisarova I, Rezacova P, Konvalinka J Biochem J. 2018 Dec 10;475(23):3847-3860. doi: 10.1042/BCJ20180764. PMID:30404922<ref>PMID:30404922</ref>
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Description: Complex of neuraminidase from H1N1 influenza virus with tamiphosphor monomethyl ester
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Pokorna, J]]
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<div class="pdbe-citations 6g01" style="background-color:#fffaf0;"></div>
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[[Category: Pachl, P]]
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==See Also==
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*[[Neuraminidase 3D structures|Neuraminidase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Pachl P]]
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[[Category: Pokorna J]]

Current revision

Complex of neuraminidase from H1N1 influenza virus with tamiphosphor monomethyl ester

PDB ID 6g01

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