This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5fnu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:00, 19 July 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Structure of the Keap1 Kelch domain in complex with a small molecule inhibitor.==
==Structure of the Keap1 Kelch domain in complex with a small molecule inhibitor.==
-
<StructureSection load='5fnu' size='340' side='right' caption='[[5fnu]], [[Resolution|resolution]] 1.78&Aring;' scene=''>
+
<StructureSection load='5fnu' size='340' side='right'caption='[[5fnu]], [[Resolution|resolution]] 1.78&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5fnu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FNU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FNU FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5fnu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FNU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FNU FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=L6I:(3S)-3-(7-METHOXY-1-METHYL-1H-BENZO[D][1,2,3]TRIAZOL-5-YL)-3-(4-METHYL-3-(((R)-4-METHYL-1,1-DIOXIDO-3,4-DIHYDRO-2H-BENZO[B][1,4,5]OXATHIAZEPIN-2-YL)METHYL)PHENYL)PROPANOIC+ACID'>L6I</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.78&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5fnq|5fnq]], [[5fnr|5fnr]], [[5fns|5fns]], [[5fnt|5fnt]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=L6I:(3S)-3-(7-METHOXY-1-METHYL-1H-BENZO[D][1,2,3]TRIAZOL-5-YL)-3-(4-METHYL-3-(((R)-4-METHYL-1,1-DIOXIDO-3,4-DIHYDRO-2H-BENZO[B][1,4,5]OXATHIAZEPIN-2-YL)METHYL)PHENYL)PROPANOIC+ACID'>L6I</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fnu OCA], [http://pdbe.org/5fnu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fnu RCSB], [http://www.ebi.ac.uk/pdbsum/5fnu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5fnu ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fnu OCA], [https://pdbe.org/5fnu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fnu RCSB], [https://www.ebi.ac.uk/pdbsum/5fnu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fnu ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/KEAP1_MOUSE KEAP1_MOUSE]] Retains NFE2L2/NRF2 in the cytosol. Functions as substrate adapter protein for the E3 ubiquitin ligase complex formed by CUL3 and RBX1. Targets NFE2L2/NRF2 for ubiquitination and degradation by the proteasome, thus resulting in the suppression of its transcriptional activity and the repression of antioxidant response element-mediated detoxifying enzyme gene expression. May also retain BPTF in the cytosol. Targets PGAM5 for ubiquitination and degradation by the proteasome (By similarity).<ref>PMID:9887101</ref> <ref>PMID:12682069</ref>
+
[https://www.uniprot.org/uniprot/KEAP1_MOUSE KEAP1_MOUSE] Retains NFE2L2/NRF2 in the cytosol. Functions as substrate adapter protein for the E3 ubiquitin ligase complex formed by CUL3 and RBX1. Targets NFE2L2/NRF2 for ubiquitination and degradation by the proteasome, thus resulting in the suppression of its transcriptional activity and the repression of antioxidant response element-mediated detoxifying enzyme gene expression. May also retain BPTF in the cytosol. Targets PGAM5 for ubiquitination and degradation by the proteasome (By similarity).<ref>PMID:9887101</ref> <ref>PMID:12682069</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 21:
==See Also==
==See Also==
-
*[[Kelch-like protein|Kelch-like protein]]
+
*[[Kelch-like protein 3D structures|Kelch-like protein 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Lk3 transgenic mice]]
+
[[Category: Large Structures]]
-
[[Category: Bolognese, B J]]
+
[[Category: Mus musculus]]
-
[[Category: Callahan, J F]]
+
[[Category: Bolognese BJ]]
-
[[Category: Cottom, J E]]
+
[[Category: Callahan JF]]
-
[[Category: Coyle, J E]]
+
[[Category: Cottom JE]]
-
[[Category: Davies, T G]]
+
[[Category: Coyle JE]]
-
[[Category: Feldser, H G]]
+
[[Category: Davies TG]]
-
[[Category: Foley, J P]]
+
[[Category: Feldser HG]]
-
[[Category: Griffiths-Jones, C]]
+
[[Category: Foley JP]]
-
[[Category: Hearn, K]]
+
[[Category: Griffiths-Jones C]]
-
[[Category: Heightman, T D]]
+
[[Category: Hearn K]]
-
[[Category: Kerns, J K]]
+
[[Category: Heightman TD]]
-
[[Category: Kou, J]]
+
[[Category: Kerns JK]]
-
[[Category: Logan, G]]
+
[[Category: Kou J]]
-
[[Category: McMenamin, R]]
+
[[Category: Logan G]]
-
[[Category: Norton, D]]
+
[[Category: McMenamin R]]
-
[[Category: Podolin, P L]]
+
[[Category: Norton D]]
-
[[Category: Rich, S J]]
+
[[Category: Podolin PL]]
-
[[Category: Richardson, C]]
+
[[Category: Rich SJ]]
-
[[Category: Sanchez, Y]]
+
[[Category: Richardson C]]
-
[[Category: Saxty, G]]
+
[[Category: Sanchez Y]]
-
[[Category: Willems, H M.G]]
+
[[Category: Saxty G]]
-
[[Category: Wixted, W E]]
+
[[Category: Willems HMG]]
-
[[Category: Woolford, A J]]
+
[[Category: Wixted WE]]
-
[[Category: Yan, H]]
+
[[Category: Woolford AJ]]
-
[[Category: Yonchuk, J G]]
+
[[Category: Yan H]]
-
[[Category: Keap1]]
+
[[Category: Yonchuk JG]]
-
[[Category: Nrf2]]
+
-
[[Category: Oxidative stress]]
+
-
[[Category: Transcription]]
+

Current revision

Structure of the Keap1 Kelch domain in complex with a small molecule inhibitor.

PDB ID 5fnu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools