5zm4

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(New page: '''Unreleased structure''' The entry 5zm4 is ON HOLD Authors: Nakashima, Y., Senda, T. Description: Fe(II)/(alpha)ketoglutarate-dependent dioxygenase AndA with preandiloid C. [[Categor...)
Current revision (09:00, 22 November 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 5zm4 is ON HOLD
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==Fe(II)/(alpha)ketoglutarate-dependent dioxygenase AndA with preandiloid C==
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<StructureSection load='5zm4' size='340' side='right'caption='[[5zm4]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5zm4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_stellatus Aspergillus stellatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZM4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ZM4 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9FU:(6aS,8aR,12aS,12bR,13aR)-5,6a,9,9,12a,13a-hexamethyl-7,8,8a,9,12a,12b,13,13a-octahydro-3H-benzo[a]furo[3,4-j]xanthene-3,4,10(1H,6aH)-trione'>9FU</scene>, <scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5zm4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zm4 OCA], [https://pdbe.org/5zm4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5zm4 RCSB], [https://www.ebi.ac.uk/pdbsum/5zm4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5zm4 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/ANDA_EMEVA ANDA_EMEVA]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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AndA, an Fe(II)/alpha-ketoglutarate (alphaKG)-dependent enzyme, is the key enzyme that constructs the unique and congested bridged-ring system of anditomin (1), by catalyzing consecutive dehydrogenation and isomerization reactions. Although we previously characterized AndA to some extent, the means by which the enzyme facilitates this drastic structural reconstruction have remained elusive. In this study, we have solved three X-ray crystal structures of AndA, in its apo form and in the complexes with Fe(II), alphaKG, and two substrates. The crystal structures and mutational experiments identified several key amino acid residues important for the catalysis and provided insight into how AndA controls the reaction. Furthermore, computational calculations validated the proposed reaction mechanism for the bridged-ring formation and also revealed the requirement of a series of conformational changes during the transformation.
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Authors: Nakashima, Y., Senda, T.
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Structural and Computational Bases for Dramatic Skeletal Rearrangement in Anditomin Biosynthesis.,Nakashima Y, Mitsuhashi T, Matsuda Y, Senda M, Sato H, Yamazaki M, Uchiyama M, Senda T, Abe I J Am Chem Soc. 2018 Jul 4. doi: 10.1021/jacs.8b06084. PMID:29972643<ref>PMID:29972643</ref>
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Description: Fe(II)/(alpha)ketoglutarate-dependent dioxygenase AndA with preandiloid C.
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Senda, T]]
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<div class="pdbe-citations 5zm4" style="background-color:#fffaf0;"></div>
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[[Category: Nakashima, Y]]
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==See Also==
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*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Aspergillus stellatus]]
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[[Category: Large Structures]]
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[[Category: Nakashima Y]]
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[[Category: Senda T]]

Current revision

Fe(II)/(alpha)ketoglutarate-dependent dioxygenase AndA with preandiloid C

PDB ID 5zm4

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