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6g7k

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'''Unreleased structure'''
 
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The entry 6g7k is ON HOLD
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==Retinal isomerization in bacteriorhodopsin revealed by a femtosecond X-ray laser: 10 ps state structure==
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<StructureSection load='6g7k' size='340' side='right'caption='[[6g7k]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6g7k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum_NRC-1 Halobacterium salinarum NRC-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6G7K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6G7K FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LI1:1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL'>LI1</scene>, <scene name='pdbligand=OLC:(2R)-2,3-DIHYDROXYPROPYL+(9Z)-OCTADEC-9-ENOATE'>OLC</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6g7k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6g7k OCA], [https://pdbe.org/6g7k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6g7k RCSB], [https://www.ebi.ac.uk/pdbsum/6g7k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6g7k ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA] Light-driven proton pump.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Ultrafast isomerization of retinal is the primary step in photoresponsive biological functions including vision in humans and ion-transport across bacterial membranes. We studied the sub-picosecond structural dynamics of retinal isomerization in the light-driven proton pump bacteriorhodopsin using an x-ray laser. A series of structural snapshots with near-atomic spatial and temporal resolution in the femtosecond regime show how the excited all-trans retinal samples conformational states within the protein binding pocket prior to passing through a twisted geometry and emerging in the 13-cis conformation. Our findings suggest ultrafast collective motions of aspartic acid residues and functional water molecules in the proximity of the retinal Schiff base as a key ingredient for this stereo-selective and efficient photochemical reaction.
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Authors: Nogly, P., Weinert, T., James, D., Cabajo, S., Ozerov, D., Furrer, A., Gashi, D., Borin, V., Skopintsev, P., Jaeger, K., Nass, K., Bath, P., Bosman, R., Koglin, J., Seaberg, M., Lane, T., Kekilli, D., Bruenle, S., Tanaka, T., Wu, W., Milne, C., White, T., Barty, A., Weierstall, U., Panneels, V., Nango, E., Iwata, S., Hunter, M., Schapiro, I., Schertler, G., Neutze, R., Standfuss, J.
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Retinal isomerization in bacteriorhodopsin captured by a femtosecond x-ray laser.,Nogly P, Weinert T, James D, Carbajo S, Ozerov D, Furrer A, Gashi D, Borin V, Skopintsev P, Jaeger K, Nass K, Bath P, Bosman R, Koglin J, Seaberg M, Lane T, Kekilli D, Brunle S, Tanaka T, Wu W, Milne C, White T, Barty A, Weierstall U, Panneels V, Nango E, Iwata S, Hunter M, Schapiro I, Schertler G, Neutze R, Standfuss J Science. 2018 Jun 14. pii: science.aat0094. doi: 10.1126/science.aat0094. PMID:29903883<ref>PMID:29903883</ref>
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Description: Retinal isomerization in bacteriorhodopsin revealed by a femtosecond X-ray laser: 10 ps state structure
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Skopintsev, P]]
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<div class="pdbe-citations 6g7k" style="background-color:#fffaf0;"></div>
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[[Category: Nogly, P]]
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[[Category: Barty, A]]
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==See Also==
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[[Category: Wu, W]]
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*[[Bacteriorhodopsin 3D structures|Bacteriorhodopsin 3D structures]]
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[[Category: Milne, C]]
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== References ==
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[[Category: Schertler, G]]
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<references/>
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[[Category: White, T]]
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__TOC__
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[[Category: Borin, V]]
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</StructureSection>
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[[Category: Nango, E]]
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[[Category: Halobacterium salinarum NRC-1]]
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[[Category: Furrer, A]]
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[[Category: Large Structures]]
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[[Category: Hunter, M]]
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[[Category: Barty A]]
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[[Category: Seaberg, M]]
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[[Category: Bath P]]
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[[Category: Cabajo, S]]
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[[Category: Borin V]]
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[[Category: Ozerov, D]]
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[[Category: Bosman R]]
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[[Category: Lane, T]]
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[[Category: Bruenle S]]
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[[Category: Nass, K]]
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[[Category: Cabajo S]]
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[[Category: James, D]]
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[[Category: Furrer A]]
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[[Category: Weierstall, U]]
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[[Category: Gashi D]]
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[[Category: Tanaka, T]]
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[[Category: Hunter M]]
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[[Category: Bosman, R]]
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[[Category: Iwata S]]
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[[Category: Schapiro, I]]
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[[Category: Jaeger K]]
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[[Category: Kekilli, D]]
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[[Category: James D]]
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[[Category: Weinert, T]]
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[[Category: Kekilli D]]
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[[Category: Neutze, R]]
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[[Category: Koglin J]]
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[[Category: Jaeger, K]]
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[[Category: Lane T]]
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[[Category: Bath, P]]
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[[Category: Milne C]]
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[[Category: Standfuss, J]]
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[[Category: Nango E]]
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[[Category: Iwata, S]]
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[[Category: Nass K]]
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[[Category: Bruenle, S]]
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[[Category: Neutze R]]
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[[Category: Panneels, V]]
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[[Category: Nogly P]]
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[[Category: Koglin, J]]
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[[Category: Ozerov D]]
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[[Category: Gashi, D]]
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[[Category: Panneels V]]
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[[Category: Schapiro I]]
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[[Category: Schertler G]]
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[[Category: Seaberg M]]
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[[Category: Skopintsev P]]
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[[Category: Standfuss J]]
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[[Category: Tanaka T]]
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[[Category: Weierstall U]]
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[[Category: Weinert T]]
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[[Category: White T]]
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[[Category: Wu W]]

Current revision

Retinal isomerization in bacteriorhodopsin revealed by a femtosecond X-ray laser: 10 ps state structure

PDB ID 6g7k

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