5vjo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:50, 4 October 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Complex between HyHEL10 Fab fragment heavy chain mutant I29F and Pekin duck egg lysozyme isoform I (DEL-I)==
==Complex between HyHEL10 Fab fragment heavy chain mutant I29F and Pekin duck egg lysozyme isoform I (DEL-I)==
-
<StructureSection load='5vjo' size='340' side='right' caption='[[5vjo]], [[Resolution|resolution]] 2.43&Aring;' scene=''>
+
<StructureSection load='5vjo' size='340' side='right'caption='[[5vjo]], [[Resolution|resolution]] 2.43&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5vjo]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/ ] and [http://en.wikipedia.org/wiki/Anas_platyrhynchos Anas platyrhynchos]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VJO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5VJO FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5vjo]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Anas_platyrhynchos Anas platyrhynchos] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VJO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VJO FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.43&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5vjq|5vjq]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Exo-alpha-sialidase Exo-alpha-sialidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.18 3.2.1.18] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vjo OCA], [https://pdbe.org/5vjo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vjo RCSB], [https://www.ebi.ac.uk/pdbsum/5vjo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vjo ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5vjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vjo OCA], [http://pdbe.org/5vjo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vjo RCSB], [http://www.ebi.ac.uk/pdbsum/5vjo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vjo ProSAT]</span></td></tr>
+
</table>
</table>
-
== Function ==
+
<div style="background-color:#fffaf0;">
-
[[http://www.uniprot.org/uniprot/U3J0P1_ANAPL U3J0P1_ANAPL]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents.[SAAS:SAAS00858876]
+
== Publication Abstract from PubMed ==
 +
Antibodies have the specificity to differentiate foreign antigens that mimic self antigens, but it remains unclear how such specificity is acquired. In a mouse model, we generated B cells displaying an antibody that cross-reacts with two related protein antigens expressed on self versus foreign cells. B cell anergy was imposed by self antigen but reversed upon challenge with high-density foreign antigen, leading to germinal center recruitment and antibody gene hypermutation. Single-cell analysis detected rapid selection for mutations that decrease self affinity and slower selection for epistatic mutations that specifically increase foreign affinity. Crystal structures revealed that these mutations exploited subtle topological differences to achieve 5000-fold preferential binding to foreign over self epitopes. Resolution of antigenic mimicry drove the optimal affinity maturation trajectory, highlighting the value of retaining self-reactive clones as substrates for protective antibody responses.
 +
 
 +
Germinal center antibody mutation trajectories are determined by rapid self/foreign discrimination.,Burnett DL, Langley DB, Schofield P, Hermes JR, Chan TD, Jackson J, Bourne K, Reed JH, Patterson K, Porebski BT, Brink R, Christ D, Goodnow CC Science. 2018 Apr 13;360(6385):223-226. doi: 10.1126/science.aao3859. PMID:29650674<ref>PMID:29650674</ref>
 +
 
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 5vjo" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Anas platyrhynchos]]
[[Category: Anas platyrhynchos]]
-
[[Category: Exo-alpha-sialidase]]
+
[[Category: Large Structures]]
-
[[Category: Christ, D]]
+
[[Category: Mus musculus]]
-
[[Category: Langley, D B]]
+
[[Category: Christ D]]
-
[[Category: Hydrolase]]
+
[[Category: Langley DB]]
-
[[Category: Hydrolase-immune system complex]]
+
-
[[Category: Lysozyme]]
+

Current revision

Complex between HyHEL10 Fab fragment heavy chain mutant I29F and Pekin duck egg lysozyme isoform I (DEL-I)

PDB ID 5vjo

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools