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6b7y

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Cryo-EM structure of human insulin degrading enzyme

6b7y, resolution 6.50Å

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Retrieved from "http://52.214.119.220/wiki/index.php/6b7y"

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 ==Cryo-EM structure of human insulin degrading enzyme==
-<StructureSection load='6b7y' size='340' side='right' caption='[[6b7y]], [[Resolution|resolution]] 6.50&Aring;' scene=''>
+<SX load='6b7y' size='340' side='right' viewer='molstar' caption='[[6b7y]], [[Resolution|resolution]] 6.50&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6b7y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6B7Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6B7Y FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6b7y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6B7Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6B7Y FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6b3q|6b3q]], [[6b7z|6b7z]], [[6b70|6b70]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 6.5&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">IDE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6b7y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6b7y OCA], [https://pdbe.org/6b7y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6b7y RCSB], [https://www.ebi.ac.uk/pdbsum/6b7y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6b7y ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Insulysin Insulysin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.56 3.4.24.56] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6b7y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6b7y OCA], [http://pdbe.org/6b7y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6b7y RCSB], [http://www.ebi.ac.uk/pdbsum/6b7y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6b7y ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/IDE_HUMAN IDE_HUMAN]] Plays a role in the cellular breakdown of insulin, IAPP, glucagon, bradykinin, kallidin and other peptides, and thereby plays a role in intercellular peptide signaling. Degrades amyloid formed by APP and IAPP. May play a role in the degradation and clearance of naturally secreted amyloid beta-protein by neurons and microglia.<ref>PMID:10684867</ref> <ref>PMID:17613531</ref> <ref>PMID:18986166</ref>
+[https://www.uniprot.org/uniprot/IDE_HUMAN IDE_HUMAN] Plays a role in the cellular breakdown of insulin, IAPP, glucagon, bradykinin, kallidin and other peptides, and thereby plays a role in intercellular peptide signaling. Degrades amyloid formed by APP and IAPP. May play a role in the degradation and clearance of naturally secreted amyloid beta-protein by neurons and microglia.<ref>PMID:10684867</ref> <ref>PMID:17613531</ref> <ref>PMID:18986166</ref>
-<div style="background-color:#fffaf0;">
-== Publication Abstract from PubMed ==
-Insulin degrading enzyme (IDE) plays key roles in degrading peptides vital in type 2 diabetes, Alzheimer's, inflammation, and other human diseases. However, the process through which IDE recognizes peptides that tend to form amyloid fibrils remained unsolved. We used cryoEM to understand both the apo- and insulin-bound dimeric IDE states, revealing that IDE displays a large opening between the homologous ~55 kDa N- and C-terminal halves to allow selective substrate capture based on size and charge complementarity. We also used cryoEM, X-ray crystallography, SAXS, and HDX-MS to elucidate the molecular basis of how amyloidogenic peptides stabilize the disordered IDE catalytic cleft, thereby inducing selective degradation by substrate-assisted catalysis. Furthermore, our insulin-bound IDE structures explain how IDE processively degrades insulin by stochastically cutting either chain without breaking disulfide bonds. Together, our studies provide a mechanism for how IDE selectively degrades amyloidogenic peptides and offers structural insights for developing IDE-based therapies.
-Ensemble cryoEM elucidates the mechanism of insulin capture and degradation by human insulin degrading enzyme.,Zhang Z, Liang WG, Bailey LJ, Tan YZ, Wei H, Wang A, Farcasanu M, Woods VA, McCord LA, Lee D, Shang W, Deprez-Poulain R, Deprez B, Liu DR, Koide A, Koide S, Kossiakoff AA, Li S, Carragher B, Potter CS, Tang WJ Elife. 2018 Mar 29;7. pii: 33572. doi: 10.7554/eLife.33572. PMID:29596046<ref>PMID:29596046</ref>
+==See Also==
+*[[Insulin-degrading enzyme 3D structures|Insulin-degrading enzyme 3D structures]]
-From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-</div>
-<div class="pdbe-citations 6b7y" style="background-color:#fffaf0;"></div>
 == References ==
 <references/>
 __TOC__
-</StructureSection>
+</SX>
-[[Category: Human]]
+[[Category: Homo sapiens]]
-[[Category: Insulysin]]
+[[Category: Large Structures]]
-[[Category: Bailey, L J]]
+[[Category: Bailey LJ]]
-[[Category: Carragher, B]]
+[[Category: Carragher B]]
-[[Category: Kossiakoff, A A]]
+[[Category: Kossiakoff AA]]
-[[Category: Liang, W G]]
+[[Category: Liang WG]]
-[[Category: Potter, S C]]
+[[Category: Potter SC]]
-[[Category: Tan, Y Z]]
+[[Category: Tan YZ]]
-[[Category: Tang, W J]]
+[[Category: Tang WJ]]
-[[Category: Wei, H]]
+[[Category: Wei H]]
-[[Category: Zhang, Z]]
+[[Category: Zhang Z]]
-[[Category: Amyloid beta]]
-[[Category: Biosynthetic protein]]
-[[Category: Hydrolase]]
-[[Category: Ide]]
-[[Category: Insulin degrading enzyme]]

6b7y

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Cryo-EM structure of human insulin degrading enzyme

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