1wyw
From Proteopedia
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==Crystal Structure of SUMO1-conjugated thymine DNA glycosylase== | ==Crystal Structure of SUMO1-conjugated thymine DNA glycosylase== | ||
- | <StructureSection load='1wyw' size='340' side='right' caption='[[1wyw]], [[Resolution|resolution]] 2.10Å' scene=''> | + | <StructureSection load='1wyw' size='340' side='right'caption='[[1wyw]], [[Resolution|resolution]] 2.10Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1wyw]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1wyw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WYW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WYW FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wyw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wyw OCA], [https://pdbe.org/1wyw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wyw RCSB], [https://www.ebi.ac.uk/pdbsum/1wyw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wyw ProSAT]</span></td></tr> | ||
</table> | </table> | ||
- | == Disease == | ||
- | [[http://www.uniprot.org/uniprot/SUMO1_HUMAN SUMO1_HUMAN]] Defects in SUMO1 are the cause of non-syndromic orofacial cleft type 10 (OFC10) [MIM:[http://omim.org/entry/613705 613705]]; also called non-syndromic cleft lip with or without cleft palate 10. OFC10 is a birth defect consisting of cleft lips with or without cleft palate. Cleft lips are associated with cleft palate in two-third of cases. A cleft lip can occur on one or both sides and range in severity from a simple notch in the upper lip to a complete opening in the lip extending into the floor of the nostril and involving the upper gum. Note=A chromosomal aberation involving SUMO1 is the cause of OFC10. Translocation t(2;8)(q33.1;q24.3). The breakpoint occurred in the SUMO1 gene and resulted in haploinsufficiency confirmed by protein assays.<ref>PMID:16990542</ref> | ||
== Function == | == Function == | ||
- | [ | + | [https://www.uniprot.org/uniprot/TDG_HUMAN TDG_HUMAN] In the DNA of higher eukaryotes, hydrolytic deamination of 5-methylcytosine to thymine leads to the formation of G/T mismatches. This enzyme corrects G/T mispairs to G/C pairs. It is capable of hydrolyzing the carbon-nitrogen bond between the sugar-phosphate backbone of the DNA and a mispaired thymine. In addition to the G/T, it can remove thymine also from C/T and T/T mispairs in the order G/T >> C/T > T/T. It has no detectable activity on apyrimidinic sites and does not catalyze the removal of thymine from A/T pairs or from single-stranded DNA. It can also remove uracil and 5-bromouracil from mispairs with guanine. |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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==See Also== | ==See Also== | ||
- | *[[DNA glycosylase|DNA glycosylase]] | + | *[[DNA glycosylase 3D structures|DNA glycosylase 3D structures]] |
- | *[[SUMO|SUMO]] | + | *[[SUMO 3D Structures|SUMO 3D Structures]] |
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Homo sapiens]] |
- | [[Category: Baba | + | [[Category: Large Structures]] |
- | [[Category: Hanaoka | + | [[Category: Baba D]] |
- | [[Category: Hiroaki | + | [[Category: Hanaoka F]] |
- | [[Category: Jee | + | [[Category: Hiroaki H]] |
- | [[Category: Maita | + | [[Category: Jee JG]] |
- | [[Category: Saitoh | + | [[Category: Maita N]] |
- | [[Category: Shirakawa | + | [[Category: Saitoh H]] |
- | [[Category: Sugasawa | + | [[Category: Shirakawa M]] |
- | [[Category: Tochio | + | [[Category: Sugasawa K]] |
- | [[Category: Uchimura | + | [[Category: Tochio H]] |
- | + | [[Category: Uchimura Y]] |
Current revision
Crystal Structure of SUMO1-conjugated thymine DNA glycosylase
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Categories: Homo sapiens | Large Structures | Baba D | Hanaoka F | Hiroaki H | Jee JG | Maita N | Saitoh H | Shirakawa M | Sugasawa K | Tochio H | Uchimura Y